PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn239411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 1304aa    MW: 145591 Da    PI: 4.9354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn239411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-1710651115155
         AP2    1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                  s++ GVr+++ +g+WvAeI+  +   ++ r +lg+f+taeeAa+a+++a+  l+g
  Achn239411 1065 SKFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFDTAEEAARAYDEAAFLLRG 1115
                  79********.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF483718.07E-14420643IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.101.1E-15124643IPR011989Armadillo-like helical
SMARTSM013493.9E-14360609No hitNo description
PfamPF136465.4E-8384484No hitNo description
PROSITE profilePS500779.759419457IPR021133HEAT, type 2
CDDcd000200.00194457573No hitNo description
SuperFamilySSF483718.07E-144773984IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.101.1E-1518151007IPR011989Armadillo-like helical
PROSITE profilePS500779.028869901IPR021133HEAT, type 2
PfamPF029853.0E-6870897IPR000357HEAT repeat
CDDcd000181.19E-2910651122No hitNo description
PfamPF008477.3E-1310651115IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1810651123IPR016177DNA-binding domain
SMARTSM003809.2E-3410661130IPR001471AP2/ERF domain
PROSITE profilePS5103219.87510661123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2610661123IPR001471AP2/ERF domain
PRINTSPR003675.6E-710671078IPR001471AP2/ERF domain
PRINTSPR003675.6E-710891105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1304 aa     Download sequence    Send to blast
MDPESTQLQQ AQLAAILGPD SAPFETLISH LMSSSNEQRS QAELAFNLCK QTDPNSLALK  60
LVHTLQVSQH VEARAMSAIL LRKQLTRDDS YLWPRLSPST QSTLKSILLA CVQREEAKTI  120
IKKLCDTVSE LASGILPENG WPELLPFMFQ CVSSDSPKLQ ESAFLIFAQL SQYIGETLIP  180
HIKHLHAVFL HCLTSSPNSE VKIASLSAVI NFIQCLSNSS DRDRFQDLLP AMMTTLTEAL  240
NGGQEATAQE ALELLIELAG TEPRFLRRQL VDVVGSMLQI AEAETLEEGT RHLAIEFVIT  300
LAEARERAPG MMRKLPQFIS RLFAILMHML LDIEDDPAWH STETEDEEAG ETSNYSVGQE  360
CLDRLSIALG GNTIVPVASE QLPAYLGAPE WQKHHAALIA LAQIAEGCSK VMIKNLEQVV  420
NMVLNSFQDP HPRVRWAAIN AVGQLSTDLG PELQNQYHQR VLPALAVAMD DFQNPRVQAH  480
AASAVLNFSE NCTPDILTPY LDGIVSKLLV LLQNGKQMVQ EGALTALASV ADSSQEHFQK  540
YYDAVMPYLK AILVNATDKS NRMLRAKAME CISLVGMAVG KEKFRDDAKQ VMEVLMSLQG  600
SQMENDDPTT SYMLQAWARL CKCLGQDFLP YMSFVMPPLL LSAQLKPDVT ITSADSDNEI  660
DESDDERPCY ELSWKITMPE LLRSAKLAVE KGLAQGHNES YIKQLSDYIV PPLVEALHKV  720
ISGPLLGESQ VRSIVDEIKQ VITASSSRKR ERAERAKAED FDAEEGELLK EENEQEEEVF  780
DQVGEILGTL IKTFKASFLP FFDELSSYLT PMWGRDKTAE ERRIAICIFD DVAEQCHEAA  840
LKTFTQKMIA VLTIHPNFLY VLTRYYDTYL PFLLEACNDE NPDVRQAAVY GLGVCAEFGG  900
SVIKPLVGEA LSRLNVVIRD PNALQAENVM AYDNAVSALG KICQFHRDSI DSAQVVPAWL  960
SCLPIKSDLI EAKVVHEQLC SMVERSDREL LGPNNQYLPK IVAVFAESCL FALGGTTEET  1020
SLSGNAKGRR EWVSAMELHF QMQQKEIFSA TKQGTTRKKR ASNKSKFVGV RQRPSGKWVA  1080
EIKNTTQKIR MWLGTFDTAE EAARAYDEAA FLLRGSNTRA NFVDPGPANS PLSLKIRNLL  1140
HQKRTSKQKL TFSPTTNIAT TSKTIRTITE QNRSNNNRLV SSVLKKDTHM FDDAYKPDLS  1200
QLEISYSQFT RPFGTEFDQF LLNQSNSVLD GFEVPKLIGF APQTNSFETG VDRIPEFEHM  1260
KVERQISASL YAMNGVNEYW ENVRDSWDAF WDLPMLCQMF CPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3w3t_A1e-842764915627Importin subunit beta-3
3w3w_A1e-842764915627Importin subunit beta-3
3w3x_A1e-842764915627Importin subunit beta-3
3w3y_A1e-842764915627Importin subunit beta-3
4zj7_A1e-842764915627Importin subunit beta-3
5h2v_A1e-842764915627Importin subunit beta-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063240.10.0importin-5-like
TrEMBLA0A2R6P8Y10.0A0A2R6P8Y1_ACTCH; Importin-5 like
STRINGVIT_06s0004g00500.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-43related to AP2 11