PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn239951
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 242aa    MW: 27585.5 Da    PI: 4.1473
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn239951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-11591392299
                 H.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
          B3  22 faeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  ae++   ++++e++ +++ d +g  +W++k++y  +++s++yvl+ ++ +Fv+ +gLk+gD ++++  ++ +++++v++++++
  Achn239951  59 SAEAYlpALVEKEGFFISMDDMNGlHVWSFKFRYwpNNTSRMYVLE-NTGDFVNTHGLKQGDYMMLY--QDyQNQNYVIRARKA 139
                 344458888899999******99999******9988899999**99.********************..666888888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.8E-435140IPR003340B3 DNA binding domain
CDDcd100171.80E-1358138No hitNo description
Gene3DG3DSA:2.40.330.102.8E-1658151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1259139IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-862139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGKNEGRSLV AGGACFGKAR GDRVRKTREC DDGESDRTEL TPDLLNHILI LRATQFQKSA  60
EAYLPALVEK EGFFISMDDM NGLHVWSFKF RYWPNNTSRM YVLENTGDFV NTHGLKQGDY  120
MMLYQDYQNQ NYVIRARKAS EQDSYTDSAV ESYVPDEFEV NDSDQVIPMN FSAMDGTEMP  180
FVYETTFSSD SETSYVYETT FSNDSIFDFW SGPMTYSSKV EPIGSFESIE NLSLEELLLS  240
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-395714324110B3 domain-containing transcription factor FUS3
6j9b_D1e-395714324110B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118286.14e-96B3 domain-containing transcription factor FUS3-like
TrEMBLA0A2R6R0T31e-145A0A2R6R0T3_ACTCH; B3 domain-containing transcription factor
STRINGEOY029171e-57(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-40B3 family protein