PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn240341
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 1039aa    MW: 115818 Da    PI: 6.0087
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn240341genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.1e-14111191186
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ +sW++++          + +GW+ Fv++++L +gD+++F +  
  Achn240341 111 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDQSWTFRH----------IYRGWSVFVSSKRLFAGDSILFIRCA 191
                 99*****************************954.4444.48***************..........889*******************8554 PP
2Auxin_resp121.56.2e-40216298183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gtv+g+s+ld vrW+nS+Wr+L+
  Achn240341 216 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYSQVSLGMRFRMMFETEESGVRRYMGTVTGISELDAVRWKNSQWRNLQ 298
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-3399219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-26103198IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-14110187No hitNo description
PfamPF023626.0E-12111192IPR003340B3 DNA binding domain
SMARTSM010193.5E-13111202IPR003340B3 DNA binding domain
PfamPF065074.1E-35216298IPR010525Auxin response factor
PfamPF023092.7E-9908996IPR033389AUX/IAA domain
PROSITE profilePS5174525.392911995IPR000270PB1 domain
SuperFamilySSF542771.91E-9913990No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1039 aa     Download sequence    Send to blast
MKAPSNGYLS NSGEGHSEQV GCIFAFDLQM YEFLVLGSDG TFFYVYAPGR SIDAKGDRWH  60
PKLSQPSFQA DPETDEVYAQ MTLQPVSKYD QEALLLSDMG LKQSRQPAEF FCKTLTASDT  120
STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IVAKDLHDQS WTFRHIYRGW SVFVSSKRLF  180
AGDSILFIRC ANRQQPALSS SVISSDSMHI GILAAAAHAA ANNSPFTIFY NPRASPSEFV  240
IPLAKYNKAM YSQVSLGMRF RMMFETEESG VRRYMGTVTG ISELDAVRWK NSQWRNLQVG  300
WDESTAGERP GRVSIWEIEP VVTPFFICPP PFFRPKFPKQ PGFPDDGSDM ENVFNRGMPW  360
LDDFGINDAS SSFFPGLSLV QWMNMQQNQR FPAAQTGFFP PAGSSTPFHS NLSADDPSKL  420
LNFQSPALST NLQFNKANQQ AVQPHQPSLA WPQQQQLQQV LESSINSQQQ QLLQQQQQQQ  480
QQQQQHKQQQ QQLEQQPQQQ QKQQMLQSAL SNNNITTPNQ IPNPSLQPLM YSQQQQLLTG  540
NTQSQQSIPS SNRNPIQLTS LPQDLQYQQQ IEQASLLQRP QQHRAPPQQT PLQSLQSSLS  600
QIPQGQNTLQ QSLSEQHLQL QLLQKLQQQQ LVSQLSHSLE PQKQQAHQHN RQSQPLPLSQ  660
QQQQQQISGN SLSTSTFMQS TQFAANQIRD QHKLIRATSG LTDTDAPSRS TSPSTNNCGV  720
SPSNFLSRNQ QKSFVLIEDP VVDPATAMVQ ELQSKSEIRI KHELPGSKGP EQQEYKGSVA  780
NQFDAASSAT SYCLDASGFQ QNFSLPSFSL DGDVQSQSRN NLAFAANFDG MAPDALLSRG  840
FDSGKDIQNL LSNYGGTPRD IETELSPAAI STQSFGVPNM SFKPGSSTDV AINEAGVLSG  900
GLCSNQSQRM RTYAKVQKRG SVGRTIDVTR YKGYDELRQD LARMFGIEGQ LEDSQRTEWK  960
LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSAVEVQQMS LDGDLGHLPV PKQACSGTDS  1020
GNVWRGHYDD NTAASFNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-10967319114388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056270.10.0LOW QUALITY PROTEIN: auxin response factor 19-like
TrEMBLA0A2R6Q5970.0A0A2R6Q597_ACTCH; Auxin response factor
STRINGXP_004508018.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-173auxin response factor 19