PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn241031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24088.3 Da    PI: 7.5663
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn241031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.46.8e-221860143
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                k+ien snrqvtfskRr+g++KKA+EL++L +a+va+i+ s+ 
  Achn241031 18 KKIENISNRQVTFSKRRAGLFKKASELCILSGAQVAIIVKSPG 60
                68*************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-281069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.1091070IPR002100Transcription factor, MADS-box
CDDcd002658.08E-341186No hitNo description
SuperFamilySSF554552.22E-261183IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-171232IPR002100Transcription factor, MADS-box
PfamPF003191.0E-211966IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-173247IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-174768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNNKKVKTTQ GRQKIDIKKI ENISNRQVTF SKRRAGLFKK ASELCILSGA QVAIIVKSPG  60
RRTFAFGHPN VDSVIDRYLA GNNSGAAASQ TCFASNYPSE FNEHYAQISK ELEFEKKRST  120
MIEESKVAYG GGLWWDEPID GLGLAELEQY AAALEELKKN VTMRADELML VKAASVPSSM  180
FAMNPNVSSD GLGDYVIDQA NDFGNSIVPI GYDFGHGHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061661.13e-88agamous-like MADS-box protein AGL62
TrEMBLA0A2R6RC511e-161A0A2R6RC51_ACTCH; Agamous-like MADS-box protein
STRINGXP_009602824.11e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-40AGAMOUS-like 62