PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn241171
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 389aa    MW: 44371.8 Da    PI: 6.5587
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn241171genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1484.9e-46561812128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 ppG+rF P d+el+ +yLkkk+ + +l+  + ik+v++y+++P++L +++   ++k+wyfF++rd+ky++g+r+nra+ +gyWkatg dk++ + kgel
  Achn241171  56 PPGYRFCPYDNELIFYYLKKKILNLPLPH-NKIKDVNLYTHNPEHLAACYPVlGDKDWYFFTPRDRKYRNGNRPNRAAGDGYWKATGADKKIEH-KGEL 152
                 9*************************999.77**************9543334899*************************************9.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 +glkk Lvfy g+ap+gekt+W+mheyr+
  Achn241171 153 IGLKKALVFYLGKAPRGEKTNWIMHEYRI 181
                 ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5553208IPR003441NAC domain
PROSITE profilePS5100553.62555208IPR003441NAC domain
PfamPF023654.4E-2556181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSFPCSETIT MEVDEQNKPN PLGTSATATQ TNSITPMNKH HQYEEEKKEE KEQLFPPGYR  60
FCPYDNELIF YYLKKKILNL PLPHNKIKDV NLYTHNPEHL AACYPVLGDK DWYFFTPRDR  120
KYRNGNRPNR AAGDGYWKAT GADKKIEHKG ELIGLKKALV FYLGKAPRGE KTNWIMHEYR  180
ILEAKPRTKK SENDMRLDDW VLCKIYQKEE KNKSKKNEQE DQGDSGRHSP ILSEECNIPP  240
ALVDDIAQMS GDYINAIANS SSHINVGNDF IQPPLAPPQI TLFPDIYPSD NINHFGAHHL  300
HVHLPMSLNY EVQQFGLGHH LGPSNENGLD IVPRRLQQDY LNIPNVSNYG VPQADPSMHS  360
LLDQENYFQP GSGLDNFLRF DGSNSPPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-535520917166NO APICAL MERISTEM PROTEIN
1ut4_B3e-535520917166NO APICAL MERISTEM PROTEIN
1ut7_A3e-535520917166NO APICAL MERISTEM PROTEIN
1ut7_B3e-535520917166NO APICAL MERISTEM PROTEIN
4dul_A3e-535520917166NAC domain-containing protein 19
4dul_B3e-535520917166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279229.17e-79NAC domain-containing protein 67-like
TrEMBLA0A2R6PFL60.0A0A2R6PFL6_ACTCH; NAC transcription factor 32 like
STRINGEOY327091e-74(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-55NAC domain containing protein 32