PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn241401

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 244aa MW: 26987.4 Da PI: 8.1407

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn241401	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.2e-13	177	222	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Achn241401 177 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 222 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.269	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-16	173	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-13	175	226	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.1E-15	176	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-13	177	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-10	177	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MTTAADGICF AVSGPLSNSC HAFHRIIFCW VVGKGLKGQM DFSSGKTSSS VRMTPILENR 60 SKNSEISGPG DGSFGEGLRN DRGYVTGFPI GSWDDSAIFS DNFPIEDDDD RKTFSVMNPS 120 ENQNTEGGNR PPTVLSHHLS LPTSSAELSA MEKLLHFQDS VPCKIRAKRG FATHPRSIAE 180 RVRRTRISER MRKLQELVPN MDKQTNTADM LDLAVDYIKD LQNEVKTLLD NRARCTCSNK 240 QKQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028101125.1	1e-102	transcription factor bHLH130-like isoform X1
Refseq	XP_028101126.1	1e-102	transcription factor bHLH130-like isoform X2
Swissprot	Q66GR3	1e-59	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2R6PFQ0	1e-150	A0A2R6PFQ0_ACTCH; Transcription factor bHLH130 like
STRING	VIT_06s0004g01740.t01	8e-93	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]