PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn241461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 234aa    MW: 24126.2 Da    PI: 8.7105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn241461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-083257227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt+ C+ +     C++Gd+C+FaHg+
  Achn241461 32 KTRMCNKYNTAEGCRFGDKCHFAHGE 57
                89**********************96 PP
2zf-CCCH37.44.3e-12202226126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +fa+ G C +GdrC+FaHg
  Achn241461 202 FKTKLCENFAK-GSCTFGDRCHFAHG 226
                 69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.8E-152862IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-82961IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3663058IPR000571Zinc finger, CCCH-type
SMARTSM003560.0363057IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-43257IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.46E-1498175IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.4E-15103172IPR004088K Homology domain, type 1
SMARTSM003223.2E-11103173IPR004087K Homology domain
PROSITE profilePS5008413.879104168IPR004088K Homology domain, type 1
PfamPF000131.0E-10106170IPR004088K Homology domain, type 1
CDDcd001051.97E-13108168No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-16197231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-9201231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.962201228IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8201227IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9202226IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLGNNPALPS ATARNPVVPP SFPDGSSPPA VKTRMCNKYN TAEGCRFGDK CHFAHGEWEL  60
GKPSIQSHGD PRSMGPMGGG RFGGGWMEPP APAGMAAAAG FGASATAKIS VDASLAGAII  120
GKSGVNSKQI CRLTGAKLSI KEHESDPNLR NVELEGTFDQ IGQASAMVRE LIVNLGSVSK  180
PPPGSNFKNH GGPGSAPHGG NFKTKLCENF AKGSCTFGDR CHFAHGAEEL RNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884GGRFGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028085605.11e-117zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R08e-81C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2R6PFS61e-168A0A2R6PFS6_ACTCH; Zinc finger CCCH domain-containing protein
STRINGcassava4.1_012715m1e-109(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-56C3H family protein