PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn243731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 492aa    MW: 54844.1 Da    PI: 7.5707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn243731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.1e-13345391455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Achn243731 345 NHVEAERQRREKLNQRFYALRAVVPTiS------KMDKASLLGDAITYITDLQ 391
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4749227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.628341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-18341410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.57E-14344395No hitNo description
Gene3DG3DSA:4.10.280.107.6E-18345410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10345391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-15347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MGQKFWVNEE DKGMVKSVLG TEAFEFLAAS ASSNSLSEFA SPVGDLGVQQ RLCKIVEGSN  60
WTYAILWQVS KSKSGNSALI WGDGHCREPK GSELADENGS KDRKVEVENR KKRVLQKLHA  120
CFGGLEEDNY ALNLDLVSDV EMFYLTSMYY SFPFDKSSSP SQSFNTGRVI WVSDAKSCSE  180
HYQSRSCLAK LARFETVVFV PLKSGVVEMG SVKSVPEEQS MIQRVKTTIG GTLLQAKVLP  240
KVFGHELSRG GGKSHMRPLT ISFSPKVEDD SEAYELQAIS TNQVYGNSSN GYRSDDGEAK  300
LFPQTNQVIV GGLEHAYEDF LIQSEDRKPR KRGRKPANGR EEALNHVEAE RQRREKLNQR  360
FYALRAVVPT ISKMDKASLL GDAITYITDL QRKIRIIESE KEMVNNKQKQ CGVSEIDFQP  420
RLEDAVVRVS CPLDTHPVSR VIKTFREHQV IAQESKVSMT DDGEIVHTFS ILAQGGTAEH  480
LKEKLLATLA K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27339423283Transcription factor MYC2
5gnj_B2e-27339423283Transcription factor MYC2
5gnj_E2e-27339423283Transcription factor MYC2
5gnj_F2e-27339423283Transcription factor MYC2
5gnj_G2e-27339423283Transcription factor MYC2
5gnj_I2e-27339423283Transcription factor MYC2
5gnj_M2e-27339423283Transcription factor MYC2
5gnj_N2e-27339423283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326334RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028090267.10.0transcription factor bHLH3-like
RefseqXP_028090268.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2R6QJ190.0A0A2R6QJ19_ACTCH; Transcription factor bHLH3 like
STRINGXP_006479569.10.0(Citrus sinensis)
STRINGXP_006443887.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-157bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]