PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn244531
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 285aa    MW: 31672.9 Da    PI: 6.0429
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn244531genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.21.4e-32144201159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ++DgynWrKYGqK+vk se+prsYY+C++ +Cpvkkkver+  d+k++ei+Y+g+Hnhe
  Achn244531 144 MNDGYNWRKYGQKQVKTSEYPRSYYKCSHLNCPVKKKVERNF-DGKITEIVYKGQHNHE 201
                 58****************************************.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-29138203IPR003657WRKY domain
PROSITE profilePS5081123.41139203IPR003657WRKY domain
SuperFamilySSF1182907.06E-26142203IPR003657WRKY domain
SMARTSM007745.2E-35144202IPR003657WRKY domain
PfamPF031069.8E-25145201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVSNFFSDNA DFCSFSQLLA GAMASPSFSA DNSSSENGGG KKLGFRQNRP SPFGMTHQQA  60
LAQVTAQAAL SQCYMNVQTE HQPSSLAAST ESLTRHQSFD SNTTIQQPVN TVISEPESST  120
MESSEVSQSD RKSLPISAAM DKPMNDGYNW RKYGQKQVKT SEYPRSYYKC SHLNCPVKKK  180
VERNFDGKIT EIVYKGQHNH ELPQSNKRAK DRIDMKPNTT NHAKPELGFQ GDTEMSMTNE  240
SSHSLCGRDQ VPGSCDHVEM SDIVIKLDED EDEDDEPNPK RRQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-191442031474WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091443.11e-110probable WRKY transcription factor 3
TrEMBLA0A2R6RUG10.0A0A2R6RUG1_ACTCH; WRKY transcription factor 4
STRINGVIT_14s0108g01280.t013e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.27e-43WRKY DNA-binding protein 4