PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn244541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 102aa    MW: 11173.7 Da    PI: 10.2645
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn244541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.51.5e-195451959
                SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY 19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                   rsYY+Ct agC+v+k+ver++ dpk v++tYeg+Hnh+
  Achn244541  5 SICRSYYKCTNAGCNVRKQVERASADPKSVVTTYEGKHNHD 45
                678*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.1E-13146IPR003657WRKY domain
SuperFamilySSF1182903.4E-15547IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-18547IPR003657WRKY domain
PfamPF031063.7E-14645IPR003657WRKY domain
PROSITE profilePS5081122.114847IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MLLNSICRSY YKCTNAGCNV RKQVERASAD PKSVVTTYEG KHNHDVPAAR KSSQNTANSN  60
TSQVKSQKVV AKKPALLAEI GFRNNDQRPV LVQLKEEQIT A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-204483478Probable WRKY transcription factor 4
2lex_A6e-204483478Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091443.19e-45probable WRKY transcription factor 3
SwissprotQ9ZQ701e-21WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2R6RUG15e-58A0A2R6RUG1_ACTCH; WRKY transcription factor 4
STRINGPOPTR_0017s12420.12e-43(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1745334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-21WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]