PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn245331
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26747.5 Da    PI: 9.1025
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn245331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.42.1e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk  rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  Achn245331  9 KRIENKVSRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTNGKLFEYST 59
                79***********************************************96 PP
2K-box87.92e-29841601086
       K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                 +++ + +++ e+ kL +++e Lqr++Rh++GedL++L+l+eLq++eqq++++l++iR++Kn+l++e+i+elqkk   
  Achn245331  84 DTESQPNWSLEHPKLSARVEVLQRNIRHYVGEDLDPLNLRELQHVEQQIDTALRRIRTRKNQLMHESISELQKKYLY 160
                 4556789******************************************************************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.987161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-34292IPR002100Transcription factor, MADS-box
CDDcd002656.17E-40279No hitNo description
PRINTSPR004043.0E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.3E-2486158IPR002487Transcription factor, K-box
PROSITE profilePS5129713.75888180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRGRVQLKR IENKVSRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST NGKLFEYSTD  60
SSMERILEKY DRYSYVERQL GAPDTESQPN WSLEHPKLSA RVEVLQRNIR HYVGEDLDPL  120
NLRELQHVEQ QIDTALRRIR TRKNQLMHES ISELQKKYLY RQNTEGNYTN SCHCDCIEKS  180
EPFQHAETVS TEFGYREEAA GMLVKKVLCY PQKGPPTMKL IAVNVAITTV K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21174173MEF2 CHIMERA
6byy_B2e-21174173MEF2 CHIMERA
6byy_C2e-21174173MEF2 CHIMERA
6byy_D2e-21174173MEF2 CHIMERA
6bz1_A2e-21174173MEF2 CHIMERA
6bz1_B2e-21174173MEF2 CHIMERA
6bz1_C2e-21174173MEF2 CHIMERA
6bz1_D2e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1133560.0HQ113356.1 Actinidia chinensis FUL-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816775.11e-92PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotD7SMN62e-92FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A2R6RUF11e-110A0A2R6RUF1_ACTCH; Agamous-like MADS-box protein
TrEMBLF4ZKL91e-110F4ZKL9_ACTCH; FUL-like protein
STRINGVIT_14s0083g01030.t018e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]