PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn245951
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 347aa    MW: 37038.5 Da    PI: 8.3253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn245951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05122144123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C++ Fs++  L  H++ H
  Achn245951 122 FTCNYCKREFSTSQALGGHQNAH 144
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-4117148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.83E-7118149No hitNo description
PfamPF139121.0E-6121146IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.718122149IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGGSDKCPSD ASSISAAFDR PLPLSQPQPR KDNKMKMKMM MQTAAGGGLE GGVDAAEHPK  60
QTEQNQSQSR LLLGLKLSPD DDDDGSKLEL NLFNPNHVDS FSQGSESSNE GKKRPSEGSR  120
VFTCNYCKRE FSTSQALGGH QNAHKQERAM AKKRQEMEQV GLGPFGHLPI PYPYYSYNSP  180
NNYTPPTTMI HHHHVSPLYG SSSGFGSGSY TNRSSSSSSL GVRMDQSMIH KPSPSTFPWS  240
TSTNVGQQTQ HRGWSSSGTS AYDRLRAVES FQSQINGSFG GPGPSRSSYP SSSSSSRFEG  300
NGGAVLGGGG YFGGTKPITH DGGDKNRGAH ACSEDDASGI DLNLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6R1510.0A0A2R6R151_ACTCH; Zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-17C2H2 family protein