PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn246461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 197aa    MW: 22383.8 Da    PI: 4.5336
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn246461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-16554148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ +v+q+G g+W++ ++      gRt++++k+ w++yl
       Achn246461  5 KGPWTHEEDQILISYVQQYGHGNWRALPKLAArlPGRTDNEIKNLWHTYL 54
                     79***********************9988888888*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.257158IPR017930Myb domain
SuperFamilySSF466897.59E-17261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-23355IPR009057Homeodomain-like
SMARTSM007171.7E-12456IPR001005SANT/Myb domain
PfamPF002491.7E-14554IPR001005SANT/Myb domain
CDDcd001672.52E-13754No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGLKKGPWTH EEDQILISYV QQYGHGNWRA LPKLAARLPG RTDNEIKNLW HTYLKKCLKN  60
YQTVPKYDST SSNESKFTEF DFSTHQGIES PGYAPVSLQD FSSEYSSVTN LTALANTMVV  120
KDEKLEESET LFSRIDAQFW SHELSGEKSN MDSDFLGVKD DGLQFQISLS TIDDSTEFWY  180
DLLTRAGGQL TELLEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097718.12e-61transcription factor MYB30-like isoform X2
TrEMBLA0A2R6PW041e-126A0A2R6PW04_ACTCH; Myb-related protein like
STRINGEOY060406e-45(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-30myb domain protein 15