PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn246921
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 243aa    MW: 28016.5 Da    PI: 6.69
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn246921genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1974127356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+ ++++eql+ Le+ F+++ +++ +++ +LA++lgL+ rqV +WFqNrRa++k
  Achn246921  74 KKKRLSNEQLDLLESSFQEEIKLDPDRKIRLARELGLQPRQVAIWFQNRRARWK 127
                 56679************************************************9 PP
2HD-ZIP_I/II120.96.4e-3973165193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekk+rls+eq+ lLE+sF+ee kL+p+rK +lareLglqprqva+WFqnrRAR+k+kqlE+ y+ Lk+++d++++e+++L++ev +Lr+ +k+
   Achn246921  73 EKKKRLSNEQLDLLESSFQEEIKLDPDRKIRLARELGLQPRQVAIWFQNRRARWKAKQLEQLYDGLKHEFDEVSREKQKLQEEVMALRAMIKD 165
                  69**************************************************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-2063131IPR009057Homeodomain-like
PROSITE profilePS5007117.94569129IPR001356Homeobox domain
SMARTSM003892.4E-1872133IPR001356Homeobox domain
PfamPF000461.5E-1674127IPR001356Homeobox domain
CDDcd000864.20E-1774130No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2176136IPR009057Homeodomain-like
PRINTSPR000311.3E-5100109IPR000047Helix-turn-helix motif
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5109125IPR000047Helix-turn-helix motif
PfamPF021831.9E-7129162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDWNGKNLRV PPFGSRQDTS SLSFLNSYNN YDHYQGVEMM KYPMLEGQAM HVAVEGGGRM  60
ENSMMKRYNN QQEKKKRLSN EQLDLLESSF QEEIKLDPDR KIRLARELGL QPRQVAIWFQ  120
NRRARWKAKQ LEQLYDGLKH EFDEVSREKQ KLQEEVMALR AMIKDQAMKN QVSTEVSGED  180
TVESTSMGNW SSGKPPGATL NCNHVHPQTA DQSNNSTFFN MVDDYNPTMP PPYWGTVLPS  240
YP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121129RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079863.12e-85putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-49ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2R6PXB01e-174A0A2R6PXB0_ACTCH; Homeobox-leucine zipper protein like
STRINGSolyc09g008810.2.15e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-49homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]