PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn247791
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 322aa    MW: 37618.9 Da    PI: 10.2008
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn247791genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.7e-30138188151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+ey++
  Achn247791 138 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLFEYAT 188
                 79***********************************************86 PP
2K-box92.86e-31208287584
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                 +  +++ + + s++ e+akLk+++e Lq++qRh++GedL++LslkeLq+L++qL+++lk+iRs+Kn+l++e+i+elqkk+
  Achn247791 208 QLIATDIESQGSWTLEHAKLKARVEVLQKNQRHFMGEDLDTLSLKELQNLKHQLDTALKHIRSRKNQLMFESISELQKKQ 287
                 555556677889******************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-40130189IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.604130190IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-34131220IPR002100Transcription factor, MADS-box
CDDcd002652.75E-41131208No hitNo description
PRINTSPR004042.7E-31132152IPR002100Transcription factor, MADS-box
PROSITE patternPS003500132186IPR002100Transcription factor, MADS-box
PfamPF003195.5E-25139186IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-31152167IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-31167188IPR002100Transcription factor, MADS-box
PfamPF014864.8E-24216287IPR002487Transcription factor, K-box
PROSITE profilePS5129714.352217321IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MIIAHNTDHN WCGFYSSALG TAWSQLENMW QQRMNSILVQ SELDNVFDET TPVFQNHFHR  60
NVVHIYHFHF RTTQNPTLHL QSRVRNTDTN SLLPLPPTFD FEAGDFSGVL EDSPKERRTR  120
GRREFLSGQM GRGRVQLKRI ENKINRQVTF SKRRSGLLKK AHEISVLCDA EVALIIFSTK  180
GKLFEYATDS SMERILERYE RYSYAERQLI ATDIESQGSW TLEHAKLKAR VEVLQKNQRH  240
FMGEDLDTLS LKELQNLKHQ LDTALKHIRS RKNQLMFESI SELQKKQVLS YFSLSDAVMV  300
TRRLVAMETS KKVRFRIKIT Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-23130214184MEF2 CHIMERA
6byy_B8e-23130214184MEF2 CHIMERA
6byy_C8e-23130214184MEF2 CHIMERA
6byy_D8e-23130214184MEF2 CHIMERA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116123RRTRGRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6QHB00.0A0A2R6QHB0_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-90AGAMOUS-like 8