PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn248041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 259aa    MW: 28884.3 Da    PI: 4.4486
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn248041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-132280146
                     TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46
                     +g W++eEde+lv++  +  g               +W+ Ia+ ++ gRt++++k++w++
       Achn248041 22 KGLWSPEEDEKLVKYMVMSSGQgqcwsevarnaglqRWSQIAAQLP-GRTDNEIKNFWNS 80
                     678***********988888778***********************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.511786IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-181786IPR009057Homeodomain-like
SuperFamilySSF466891.42E-111789IPR009057Homeodomain-like
SMARTSM007177.2E-92184IPR001005SANT/Myb domain
PfamPF002491.2E-102280IPR001005SANT/Myb domain
CDDcd001677.11E-102579No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKKPLPIGKN NNNVTSNSKM RKGLWSPEED EKLVKYMVMS SGQGQCWSEV ARNAGLQRWS  60
QIAAQLPGRT DNEIKNFWNS TIKKRLRNSS SPLTSPNVGD SSLKTRDVTQ GNITMRASNT  120
MAMFMDSSPS SSSTVTRSLP MNYSIDPTVF SASGYFNVPM FMPQVGMGGD VFYGNYNGIL  180
GGNRDLFVPP LECTSMDEEN GDNKNLLDRN INNNIEVESM EGFETCWQEG DDLKVEEWDL  240
EELMSVVSSF PFLDFQSE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068093.13e-75transcription factor MYB46-like
TrEMBLA0A2R6P8441e-175A0A2R6P844_ACTCH; Transcription factor like
STRINGXP_009609673.13e-57(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000189953e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-30myb domain protein 83