PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn248061
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YA
Protein Properties Length: 763aa    MW: 84748.7 Da    PI: 7.3623
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn248061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.53.3e-31577633158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+R+sgGrF
  Achn248061 577 QEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHAMRRARASGGRF 633
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549285.51E-1429120IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003600.01442111IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3304.8E-1542127IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.6E-23141243IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549285.37E-19144236IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.104155232IPR000504RNA recognition motif domain
CDDcd122543.16E-30156228No hitNo description
SMARTSM003601.3E-7156228IPR000504RNA recognition motif domain
PfamPF000761.7E-7158225IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3302.6E-24246353IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549285.64E-20258352IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.053264341IPR000504RNA recognition motif domain
SMARTSM003607.8E-8265337IPR000504RNA recognition motif domain
CDDcd122541.17E-30265337No hitNo description
PfamPF000762.9E-8267334IPR000504RNA recognition motif domain
SMARTSM005215.8E-35575636IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.934576636IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-26578633IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-23579601IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860581601IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-23610633IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MGPKRQRVID QGSSFYGTPP GSSFMYNPPP YSYIGQIPPF PVVRLHGLPF DCSEADIAEF  60
FHGLDIVDIL FVHKNGKFSG EAYCVLAYSI QVDFALQKNR QNIGRRYVEV FRCKRQEYYK  120
AIANEVSDSH GGSPHRNISK AKSSDNGKES AEHTGVLRLR GLPFSASKDD IMDFFKDFVI  180
SEDSIHIIIN SEGRPTGEAF MGFASAEDSK AAMSKDRKRL GNRYIELFPS TPEELDAAVS  240
RSRSNISNNP KSSEEGKDSD EHSGVLRMRG LPFSAGKEDI IDFFKDFVLS EDSVHVMFNS  300
GGRATGEAFV EFANAEDSKA AMTKDRMTLG SRYIELFPAS FDELNDAASR ARTRRTRKPR  360
RTKYKNEEKP ELGSMQSKSE IANQIEANPY KIPPSAALSE PWWRHSNYNS ISSTVIAENT  420
SNPSSREQSK DDQSQSDDGV DEEDDDAIKE SHISASPHSG NSITYQNCKE GSHINERLVL  480
VGGEGEVRIV VVNDTGRRRY VNDENYGHGH QNYQSNESLT QPPQLELVGH SIACASNPYF  540
DPYYAGIMAT YGPQPLGPPH LLDMNHARMP LPLEMTQEPV YVNAKQYHGI LRRRQSRAKA  600
ELERKLIKVR KPYLHESRHQ HAMRRARASG GRFAKKSDSN ALKSTAKETG MASGSAISSH  660
CTISSGSKPL HCEIAQTNNG HQEAKGPETY EVRRYANDND QYENHSRFQA STYGVNSANG  720
GEGGSSGQQW GSHSSNKASQ RCHNAGFSSN AWSTVHHLSK EA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dhs_A4e-35423446185Heterogeneous nuclear ribonucleoprotein H
6dhs_B4e-35423446185Heterogeneous nuclear ribonucleoprotein H
6dhs_C4e-35423446185Heterogeneous nuclear ribonucleoprotein H
6dhs_D4e-35423446185Heterogeneous nuclear ribonucleoprotein H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-52nuclear factor Y, subunit A1