PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn248341
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 256aa    MW: 28796.2 Da    PI: 6.4207
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn248341genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12117142126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF+H+
  Achn248341 117 YQPDICKDYKETGYCGYGDSCKFMHD 142
                 67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.15E-9114147IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7116143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878116144IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-12117147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.4E-13188236IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.35E-13194237No hitNo description
PfamPF139206.7E-9194237No hitNo description
SMARTSM001841.8E-4195232IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.409195233IPR001841Zinc finger, RING-type
CDDcd001624.21E-8195236No hitNo description
PROSITE patternPS005180210219IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSSESNVESI TPMFQFESSK EIQVQDDGRA TATLETETEF SKDARAIRER VLKQAEEALK  60
GKGKNPADEK LYKGIHGYTD YKAGFRREQK VSAEKAGGSH GPLRASAHIR VTARFDYQPD  120
ICKDYKETGY CGYGDSCKFM HDRGDYKSGW QLEKEWDEAE KVRKRNLALG GDDMDDEGAV  180
DQGDEDDEDA LPFACFICRQ PFVDPVVTKC KHYFCEHCAL KHHAKNKKCF VCNKPTDGIF  240
NTAHEIKKKI AADGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-6518250105317RING finger protein 113A
5z58_M2e-6518250105317RING finger protein 113A
6ff4_t2e-6518250105317RING finger protein 113A
6ff7_t2e-6518250105317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112176.11e-175zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-139C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A068UR941e-155A0A068UR94_COFCA; Uncharacterized protein
STRINGXP_009609000.11e-154(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-141C3H family protein