PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn248441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 251aa    MW: 27300.9 Da    PI: 7.9792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn248441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004105127123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  Achn248441 105 YQCKTCDRCFPTFQALGGHRASH 127
                 9***********99999998887 PP
2zf-C2H2130.0003169191123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +Cg  Fs+   L  H+r+H
  Achn248441 169 HECMICGAKFSSGQALGGHMRRH 191
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.159105132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-7105127No hitNo description
PfamPF139125.2E-10105129IPR007087Zinc finger, C2H2
SMARTSM003550.088105127IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-7164191No hitNo description
PROSITE profilePS501579.369169191IPR007087Zinc finger, C2H2
PfamPF139129.0E-11169192IPR007087Zinc finger, C2H2
SMARTSM003550.017169191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEIQDEAHNM QIIKGKRTKR PRQASPITLT MAATSSSTAE SDGRISQNSG GPTTTSSAAI  60
SVHSNQEEED QDMANCLILL AQGQTCNLPL SSMPTNKAVA GVFLYQCKTC DRCFPTFQAL  120
GGHRASHKKP KASFVLVRED DVEIDNSVVL SVQIPHRGSS CNVNKFRIHE CMICGAKFSS  180
GQALGGHMRR HRTVSMVKEY EEVKINSTSG LGLDLNLPAP EDDHRESKFA FASKKQVIVF  240
SASSLVDCHY *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028101452.13e-86zinc finger protein ZAT5-like
SwissprotQ681X49e-48ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A2R6Q9N80.0A0A2R6Q9N8_ACTCH; Zinc finger protein
STRINGEOY079711e-79(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-52C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]