PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn248561

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 182aa MW: 20604.5 Da PI: 6.3426

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn248561	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.7	1.5e-41	14	114	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+lapyfp +++ kf ++h+ FGasn++k+l++lpe+ reda+ss+vyeA+ar++dPvyG++g+i +lq+q+++l+aela++++ Achn248561 14 PCAACKILRRRCAEKCILAPYFPPTDTLKFTIAHRHFGASNIIKFLQDLPESLREDAVSSMVYEANARLKDPVYGCAGTIYHLQNQVSELQAELAKTQA 112 7***********************************************************************************************999 PP DUF260 100 el 101 +l Achn248561 113 QL 114 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.888	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-41	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MNLNLNLNLI DRRPCAACKI LRRRCAEKCI LAPYFPPTDT LKFTIAHRHF GASNIIKFLQ 60 DLPESLREDA VSSMVYEANA RLKDPVYGCA GTIYHLQNQV SELQAELAKT QAQLISRRCE 120 KADLQALVYP TFMSQQQQQQ QQQQHVPFDH SLDFALDDSK FGMLGSLSGV EANLEEISEF 180 W*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-38	14	119	11	116	LOB family transfactor Ramosa2.1
5ly0_B	8e-38	14	119	11	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409877.1	2e-65	LOB domain-containing protein 11
Refseq	XP_013614548.1	2e-65	PREDICTED: LOB domain-containing protein 11-like
Refseq	XP_013681453.1	2e-65	LOB domain-containing protein 11-like
Refseq	XP_028100189.1	1e-65	LOB domain-containing protein 1-like
Swissprot	Q9SK08	9e-65	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2R6RS39	1e-131	A0A2R6RS39_ACTCH; LOB domain-containing protein
STRING	Bo01039s010.1	6e-65	(Brassica oleracea)
STRING	XP_006409877.1	8e-65	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	7e-64	LOB domain-containing protein 11