PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn249361
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 492aa    MW: 54530.5 Da    PI: 6.8546
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn249361genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-12163219155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Achn249361 163 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 219
                 78*******************77776664346655.77******************98 PP
2AP235.82e-11251296755
         AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Achn249361 251 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 296
                 8999********988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.19E-17163227No hitNo description
SuperFamilySSF541714.05E-13163228IPR016177DNA-binding domain
PfamPF008478.0E-10163219IPR001471AP2/ERF domain
SMARTSM003802.9E-20164233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-11164227IPR001471AP2/ERF domain
PROSITE profilePS5103216.674164304IPR001471AP2/ERF domain
PRINTSPR003672.4E-6165176IPR001471AP2/ERF domain
CDDcd000182.10E-21251306No hitNo description
SMARTSM003801.8E-27251310IPR001471AP2/ERF domain
PfamPF008472.6E-6251296IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-14252306IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-15252304IPR001471AP2/ERF domain
PRINTSPR003672.4E-6286306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAAHQYSSQE REAAMALTLD SLYYHQNPEI QQQEQEIEAQ NNPYYSGLPC NGMLYYSPLE  60
VQIKDNQMAT MGGGNWVSGH YSDHHGVVVD GSGGGGVSTC GDLQSLSLSM SPGSQSSCVI  120
SPSTGTDHCN NMAIETKKRG SAIVAPKQPV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH  180
LWDNSCKKEG QTRKGRQGGY DMEEKAARAY DLAALKYWGP STHINCPLEN YQQELEEMKN  240
MTRQEYVAHL RRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV  300
TNFDISKYDV ERIMASNTLL SSELAKRNKD REPKSEAIEY HHHSSIQNNE ELVQSQSNTD  360
NNWKMVSCQS HSQSPQNPRF DSSLDEKLLC IGNYRNSSFL QDLIGIDSMS SGQAITMDEP  420
AKLGGVHFSN PSSLVTSLSS SREASPDKNG SMLFTKLPPT VGSWIPSAQL RAAAAPISVA  480
HLPVFAAWND T*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285467.20.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-132CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2R6RN930.0A0A2R6RN93_ACTCH; AP2-like ethylene-responsive transcription factor ANT
STRINGVIT_18s0001g08610.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-109AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]