PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn250041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 752aa    MW: 82675.4 Da    PI: 6.401
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn250041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.3e-1952107156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++ Le++F  +++p++++r eLAkkl+L+ +qVk+WFqNrR++ k
  Achn250041  52 KKRYHRHTQKQIKMLEDYFVVTKHPNKQQRMELAKKLSLDVKQVKFWFQNRRTQLK 107
                 678899**********************************************9877 PP
2START157.31.2e-492594841206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela++a++elvk+ + ++p+Wv+s     e +n de++++  +  +     + +ea ra+gvv+ ++  lv +l+d + qW ++++    + ++++vi 
  Achn250041 259 ELALCAMDELVKLSQIDDPLWVQSLdggrEVLNDDEYMRICLPCIGtkpngFVTEATRATGVVFINSLALVDSLMDAN-QWVKMFPnmigRSSVIDVIF 356
                 6899************************99***********99888999999**************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                  g        lqlm ae+q l p vp R   f+R+++q+g+g+w +vdvSvd  q+ +   s +v +++lpSg++++++s+g+skvt veh +++++++
  Achn250041 357 GGlvgsrtCSLQLMHAEFQSLLPSVPvRSMKFLRFCKQHGEGVWGVVDVSVDGIQEFSDaRSTFVSCRRLPSGCIVQDLSKGYSKVTCVEHSEYDESMV 455
                 *******99***********************************************9999*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h l+ +l+ sg+ +ga++w++ lqrqce+
  Achn250041 456 HHLYCRLLTSGMCFGAQRWLSSLQRQCEC 484
                 ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-1937103IPR009057Homeodomain-like
SuperFamilySSF466891.03E-1939108IPR009057Homeodomain-like
PROSITE profilePS5007117.79949109IPR001356Homeobox domain
SMARTSM003898.0E-1750113IPR001356Homeobox domain
CDDcd000862.26E-1751109No hitNo description
PfamPF000462.9E-1652107IPR001356Homeobox domain
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PROSITE profilePS5084836.12250487IPR002913START domain
SuperFamilySSF559611.35E-26250484No hitNo description
CDDcd088758.45E-101254483No hitNo description
PfamPF018522.1E-42259484IPR002913START domain
SMARTSM002347.1E-29259484IPR002913START domain
SuperFamilySSF559617.83E-12512725No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MEGPSKMTSM GKEFESRLMG RIKENEDEGR SENDNLEGAS SDDQHGTHNK RKKRYHRHTQ  60
KQIKMLEDYF VVTKHPNKQQ RMELAKKLSL DVKQVKFWFQ NRRTQLKAQV ERFETDILKR  120
QCDELVIDNI RMKEAMRNPI CGNCGGPAIL GNISIEEHHP RVENAILKDE LSLISALANK  180
FLGRPISSLA SSIFAPTSNS SLELTIGRTG FSGFTSLDTT FPTGLIDSKD GILNVLPPTT  240
PTVSVEGVDV PFEKSIFLEL ALCAMDELVK LSQIDDPLWV QSLDGGREVL NDDEYMRICL  300
PCIGTKPNGF VTEATRATGV VFINSLALVD SLMDANQWVK MFPNMIGRSS VIDVIFGGLV  360
GSRTCSLQLM HAEFQSLLPS VPVRSMKFLR FCKQHGEGVW GVVDVSVDGI QEFSDARSTF  420
VSCRRLPSGC IVQDLSKGYS KVTCVEHSEY DESMVHHLYC RLLTSGMCFG AQRWLSSLQR  480
QCECLAILSS SDISTEDHTG LSQIGRRSMV KLAQRMTRSF CAGVCSTLHA WQLIQDGNTG  540
EKARLMIRNS VDNSGEPPGI VLSATTLVWM PVSQQLLFDF LRNEQMRSEW DELSDGGPIQ  600
EMVRITKGRG SANYVSLIRA TSANTNQNTM LLLQETQSDA SGSLVVYTAV DILAMQAVMN  660
GGDSATVAIL PSGFTIVPDG FPDSAGPSNR INSLVGESGS GSGNGSLLTI GFQILINNAP  720
LAELTKESID NVSKLISRTI QRIKAALSFA A*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088640.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A2R6RWC10.0A0A2R6RWC1_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]