PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn252961
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family RAV
Protein Properties Length: 352aa    MW: 40059.4 Da    PI: 8.3389
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn252961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.77e-094592154
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                s++kGV   + +g W A+I+       + +r++lg+f ++ eAa  ++ a +kl+
  Achn252961 45 SKFKGVVPQP-NGHWGAQIYA------NhQRIWLGTFKSEIEAAMVYDSASLKLR 92
                79****9778.8******999......44**********99**********9998 PP
2B382.92.9e-26166263186
                 EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 f+k+ltpsdv+k++rlv+pkk+a ++            +  k  ++ l ++d+  r W+++++y+k+s+++v+t+GW++Fvk++gLke+D++ F++ +
  Achn252961 166 FQKELTPSDVGKLNRLVIPKKYAVKYfpevpesteeniDDGKVDEVYLFFYDRIMRLWKFRYCYWKSSQSFVFTRGWNRFVKEKGLKENDIIAFYVCE 263
                 99*************************99998888888334458899999*********************************************653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1445102IPR016177DNA-binding domain
CDDcd000182.96E-2045103No hitNo description
Gene3DG3DSA:3.30.730.103.4E-1446101IPR001471AP2/ERF domain
PROSITE profilePS5103216.22646101IPR001471AP2/ERF domain
SMARTSM003801.6E-1546107IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.2E-30161264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-27164263IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-23165260No hitNo description
PROSITE profilePS5086311.476166281IPR003340B3 DNA binding domain
PfamPF023627.7E-24166264IPR003340B3 DNA binding domain
SMARTSM010197.3E-20166270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEEEPSSMIE DVKTRVITED SVSSSPCQPS NAGMHPIKDN KAMSSKFKGV VPQPNGHWGA  60
QIYANHQRIW LGTFKSEIEA AMVYDSASLK LRTGDNYRNF PWTNVTVHEP KFQSLHSTEA  120
ILNMIKDGSY PSKFAVFLGS QKGEQDLGVN LIKGHGHGGF SCKLLFQKEL TPSDVGKLNR  180
LVIPKKYAVK YFPEVPESTE ENIDDGKVDE VYLFFYDRIM RLWKFRYCYW KSSQSFVFTR  240
GWNRFVKEKG LKENDIIAFY VCEGRERAKE GQPFCAIDVV YTGGSRNSRV DEGRSQNVDT  300
QVDLHLRLGQ NLSCWLVKKD DEEFENSKFF TGLKPTPNGK KSVRLFGVEL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2716226710108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093432.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6883e-97RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2R6RF150.0A0A2R6RF15_ACTCH; AP2/ERF and B3 domain-containing transcription factor
STRINGVIT_11s0037g00010.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-99RAV family protein