PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn252981
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 109aa    MW: 12452.5 Da    PI: 9.7171
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn252981genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.12.1e-32959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Achn252981  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
CDDcd002659.36E-44276No hitNo description
SuperFamilySSF554552.09E-34275IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-333859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SSMLKTLERY QKCNYGAPEP NISTREALVT VLSEIKFSID LVYLEENK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-22191188MEF2 CHIMERA
6byy_B9e-22191188MEF2 CHIMERA
6byy_C9e-22191188MEF2 CHIMERA
6byy_D9e-22191188MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in inflorescence development and floral organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3574582e-94GU357458.1 Pachysandra terminalis SEPALLATA3-like protein (SEP3_2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051247.11e-60agamous-like MADS-box protein AGL9 homolog
SwissprotQ424644e-58AGL9_SOLLC; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A484KM861e-57A0A484KM86_9ASTE; Uncharacterized protein
STRINGGLYMA05G28140.31e-56(Glycine max)
STRINGGLYMA08G11120.21e-56(Glycine max)
STRINGXP_007158666.16e-58(Phaseolus vulgaris)
STRINGSolyc05g015750.2.11e-56(Solanum lycopersicum)
STRINGPGSC0003DMT4000563639e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.31e-59MIKC_MADS family protein