PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn253161

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 296aa MW: 34137.8 Da PI: 7.7459

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn253161	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.3	1.4e-24	27	118	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk+ s++s++ g +++r+fvC+++g ++++kk+++++ r+r++ r+gC+akl ++ke + +w+++++++ HnHel Achn253161 27 EYYSNFARKNGFSIRKAWSTESQNLG-VYRRDFVCYRSGLNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgNTQWYISQFSNVHNHELL 118 69******************8888.**************************************99777899************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-22	27	118	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MTSLLSSEGV FTPYVGQIFK SDDEAFEYYS NFARKNGFSI RKAWSTESQN LGVYRRDFVC 60 YRSGLNQPRK KANVEHPRER KSVRCGCDAK LYLTKEIVDG NTQWYISQFS NVHNHELLED 120 DKVRLLPAYR KIKQADQECI LLLSKAGFPV NQIVKVLEIE KGAQPGQLPF IEKDVRNFIR 180 ACKKTVQEND VLLTEKREND MLDLLEACKE KYFTLRWRLE SSIVPVDHPI TQCSNNECSQ 240 VFHSLNATLF SESLISKERF SYVHRELTHL LENVRNMPAN NEVTMNLAPN NVSES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447802.1	1e-132	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_006447803.1	1e-132	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_015382916.1	1e-132	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024047442.1	1e-132	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	1e-120	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2R6QWF1	1e-133	A0A2R6QWF1_ACTCH; Protein FAR1-RELATED SEQUENCE 10
STRING	XP_006469463.1	1e-131	(Citrus sinensis)
STRING	XP_006447802.1	1e-131	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-123	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]