PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn253521
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 261aa    MW: 29095.7 Da    PI: 7.0617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn253521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07139186455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR +iN+++  L+ ++P +     k +  a +L + ++Y++sLq
  Achn253521 139 SHSLAERVRRGKINERLKCLQGIVPGC----YKTMGMAVMLDEIINYVQSLQ 186
                 8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.04E-8133190No hitNo description
SuperFamilySSF474596.54E-16133203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-15135197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.761135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-5139186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-7141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MELINQYAEL SQSPMENPNL INFQSLMGFS IDNFLIQQTP EFPGNLAGNF PGIFHHDAKN  60
VLPVSEPNSS GGNEIHGIKK RKEIDVQESS SGNSSPPVSE DGIRRKNGRG KRMRGNEERE  120
EKLKEVVHVR ARRGQATDSH SLAERVRRGK INERLKCLQG IVPGCYKTMG MAVMLDEIIN  180
YVQSLQNQVE FLSMKLTAAS RFYDFNSDTD AMEAMQRAKA YEAQKVQRIV TEGYQELASS  240
SQLGSSDLTF GSFPSLPYNT *
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240586.11e-110PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK73e-62BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A2R6PCD70.0A0A2R6PCD7_ACTCH; Transcription factor BEE like
STRINGXP_007154151.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.16e-61BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]