PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn253691

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

M-type_MADS

Protein Properties

Length: 138aa MW: 15725 Da PI: 10.5631

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn253691	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25.7	1.5e-08	20	44	6	30
HHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvL 30 k qv f kR g++KKA+EL++L Achn253691 20 KDHLQVKFLKRCIGLFKKASELCIL 44 55679*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0068	7	50	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.031	7	44	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.58E-8	8	46	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.1E-8	17	45	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MTKKPNIGHK KIKIINIKVK DHLQVKFLKR CIGLFKKASE LCILYEFGMN ELEQLRVFMK 60 ELKKHVTNQV NKVLDEGISN LLPFFFGNNG GGMVNNLRVT PLLSMLLQPL LVSIILAMVM 120 AFSKVFDLRD DFVHLPK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-