PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn253811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 652aa    MW: 73876.5 Da    PI: 9.9441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn253811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12181232155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Achn253811 181 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 232
                 79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.77E-11179236No hitNo description
Gene3DG3DSA:4.10.280.102.7E-13179235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16180252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428180231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9181232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9186237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
HamapMF_0136619.166428552IPR005822Ribosomal protein L13
Gene3DG3DSA:3.90.1180.101.3E-54429570IPR005822Ribosomal protein L13
TIGRFAMsTIGR010775.0E-52429570IPR005755Ribosomal protein L13, eukaryotic/archaeal
CDDcd003922.85E-40429530IPR005822Ribosomal protein L13
SuperFamilySSF521617.98E-48429571IPR005822Ribosomal protein L13
PfamPF005723.8E-8430537IPR005822Ribosomal protein L13
PROSITE patternPS007830506529IPR023563Ribosomal protein L13, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0015934Cellular Componentlarge ribosomal subunit
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MKSEGGKGSE ERCWPVIHIN KREAKVDYNS IDHHHQLMKP RIGESSGENS NQIGDYTLHN  60
PDKLMSFADV MQFADFGPKL GLNPNKISEE DEDEAGIDPV YFLRFPVLND KLEGGETLIV  120
PRDEERENEE GGDGGGGSEY DATVKLGIVG ENMLQKNAGM EAKSKRKRAR TTKTSEEVES  180
QRMTHIAVER NRRKQMNEHL RVLRSLMPGS YVQRGDQASI IGGAIEFVRE LEQLLQCLES  240
QKRRRLYGDP PPPKQPVVAG DSSSLAIQPP PLPPFFSPVP IPNDQLRVLD FETGLREEMA  300
ESKSCLADVE VKMLGIDAMI KILSRRRPGQ LIKAIAALED LQLNILHTNI TTIEQTVLYS  360
FNVKFVQRLE LLRQLISRIF LFGFSPEQNQ NRQERLNGLC VGITTSRLRR ERKRAVTMVS  420
GSGICERRVV VDARHHMLGR LASILAKELL NGQKVVVMRC EEICLSGGLV RQKMKYLRFL  480
RKRMNTKPSH GPIHFRAPSK ILWRTIRGMI PHKTKRGAAA LARLKVYEGI PPPYDKMKRM  540
VIPDALKVLR LQAGHKYCLL GKLSSEVGWN HYDIIRELEK KRKEKSQVTY ERKKKLTKLR  600
LKAEKAAEEK LDGEGVVYTV KLEREACVDE GESVPFKIHG PHIQDLSSKL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_LK1e-1174186111194Ribosomal protein L13a
4v7e_CO1e-117418611119460S ribosomal protein L13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181192RMTHIAVERNRR
2241245KRRRL
3406411RLRRER
4580593KRKEKSQVTYERKK
5580594KRKEKSQVTYERKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028095059.11e-151transcription factor FAMA isoform X3
TrEMBLA0A2R6S0880.0A0A2R6S088_ACTCH; Transcription factor FAMA like
STRINGPOPTR_0001s32160.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46572341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.17e-85bHLH family protein