PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn254421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 204aa    MW: 23409.5 Da    PI: 6.8117
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn254421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.3e-2057109456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++++++eq+++Le  F +++++ ae++ +LA++lgL+ rqV vWFqNrRa+++
  Achn254421  57 KRKLSEEQVNQLEMSFGNEHKLEAERKDKLASELGLDPRQVAVWFQNRRARWR 109
                 45899***********************************************9 PP
2HD-ZIP_I/II1056e-3456147291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayda..lkeenerLekeveeLreel 91 
                  +kr+ls+eqv++LE+sF +e+kLe erK +la+eLgl+prqvavWFqnrRAR+++k++E++y++Lk+++++  + + +e+L++  +e+++ l
   Achn254421  56 RKRKLSEEQVNQLEMSFGNEHKLEAERKDKLASELGLDPRQVAVWFQNRRARWRSKKMEEEYSKLKNEHETtvVLKLKEQLSDADKEIQKML 147
                  8********************************************************************98223456677777777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.60151111IPR001356Homeobox domain
SMARTSM003892.1E-1854115IPR001356Homeobox domain
SuperFamilySSF466892.05E-1756120IPR009057Homeodomain-like
CDDcd000867.41E-1656112No hitNo description
PfamPF000462.9E-1757109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-2058118IPR009057Homeodomain-like
PRINTSPR000318.0E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000318.0E-691107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTTSMDHSQV ENEMVLISRF YPGIYSQLVP QQGEAKPRRR KKKSKGEGSS GGGLMRKRKL  60
SEEQVNQLEM SFGNEHKLEA ERKDKLASEL GLDPRQVAVW FQNRRARWRS KKMEEEYSKL  120
KNEHETTVVL KLKEQLSDAD KEIQKMLERC DGISSNSPSS SFSMEAMGPP FVGEFGMEGF  180
ENIFNVPENN YINNGMDWVD LYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13640PRRRK
24058KKKSKGEGSSGGGLMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109158.12e-92homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU702e-66ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A2R6RLA41e-120A0A2R6RLA4_ACTCH; Homeobox-leucine zipper protein like
STRINGXP_009590483.15e-87(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-57homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]