PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn254561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 499aa    MW: 52355.1 Da    PI: 8.7985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn254561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056587123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  Achn254561 65 FICEICNKGFQRDQNLQLHRRGH 87
                89*******************88 PP
2zf-C2H214.69.3e-05141163123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H++++
  Achn254561 141 WKCEKCSKKYAVQSDWKAHLKVC 163
                 58******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.02E-76487No hitNo description
Gene3DG3DSA:3.30.160.601.3E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.0E-56587IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355210106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.02E-7136161No hitNo description
SMARTSM0035579141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MPADLDNSSA MNESTASGEA SVSSSVNQMA PPKPEKKRRN LAGMPDPDAE VIALSPRTLL  60
ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSSNE VRKRVYVCPE PSCVHHDPSR  120
ALGDLTGIKK HFCRKHGEKK WKCEKCSKKY AVQSDWKAHL KVCGTREYKC DCGTLFSRRD  180
SFITHRAFCD ALAIESAKAP PSLDEDPKLP AVASSPPTSL PLPTLSPSSA AISSALPFQS  240
PELPENPIPA QILDDARVTT SLTGSCSSTS SSSSNGSTSS SVFTSLFASS TASASLQSQP  300
LGFTDLIRVM ACPERAPDLI TSSSTESISL CLATNHGSSI FGPAGQERRQ YAPPPQPAMS  360
ATALLQKAAQ MGATATNASF LRGLGIVSST SAPSGPPDWD RRQIEPKSGS LAAGLGLGVP  420
CDSSSGLKEL MIGTSSVFRP KQTTLSLLGL GVAASGGPTS DLSSLMTSVG GSSGLNVATA  480
AALFGGGEFT GKDKGRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34137198364Zinc finger protein JACKDAW
5b3h_F2e-34137198364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076239.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-176IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2R6RLA80.0A0A2R6RLA8_ACTCH; Protein indeterminate-domain like
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-103C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]