PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn255701

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 227aa MW: 24893.6 Da PI: 5.8462

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn255701	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.1	1.1e-09	12	54	4	44
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT e d+ + +a + + +W+++a++++ g+t +++k+++ Achn255701 12 WTREQDKAFENALAIISEDssdQWEKVAAMVP-GKTVEEIKHHY 54 ******************************.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.679	4	58	IPR017877	Myb-like domain
SMART	SM00717	1.9E-7	8	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-4	9	55	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.48E-11	10	65	IPR009057	Homeodomain-like
CDD	cd00167	1.64E-7	12	54	No hit	No description
Pfam	PF00249	3.0E-7	12	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.34E-5	113	143	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSINRTFNSS FWTREQDKAF ENALAIISED SSDQWEKVAA MVPGKTVEEI KHHYVILVED 60 IDAIESGCVP LPCYKDSASH DSDAGFGREG RRFEQMHSDS CSGGKSSRSD QERRRGIAWT 120 EEEHRTPTQV ASHAQKYFIR LSSATKERRR SSIHDITSVG EGDASTPQEP ITGQIVGAAS 180 RGSFGGIGNP MPTSASNISG FVPPTIVQSI DMPLMTYLRP HSSDQM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-18	12	80	11	79	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028094516.1	1e-92	transcription factor SRM1
Refseq	XP_028094517.1	1e-92	transcription factor SRM1
Refseq	XP_028094518.1	1e-92	transcription factor SRM1
Refseq	XP_028094519.1	1e-92	transcription factor SRM1
Swissprot	Q9FNN6	3e-61	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2R6RJC9	1e-158	A0A2R6RJC9_ACTCH; Transcription factor DIVARICATA like
STRING	XP_007153178.1	6e-77	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15159	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-60	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]