PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn255771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 268aa    MW: 30056 Da    PI: 4.5166
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn255771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.74.8e-111150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i n+s r+ t+ kR +  +KK  ELSvL d+ +  +++s+
  Achn255771 11 ITNESARKATLKKRGASFFKKTDELSVLSDVTIGTVVYSP 50
                89************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-9160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.302149IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-16294IPR002100Transcription factor, MADS-box
CDDcd002661.21E-17284No hitNo description
PfamPF003191.1E-111151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTRNKITHSL ITNESARKAT LKKRGASFFK KTDELSVLSD VTIGTVVYSP GEADPAVYPS  60
YEVLKLMFEE FMSMSILGRS QKMVTQESFL VQRVIKETEE KNKEKKRNDR LETQEVMNKV  120
FEGNDLNELD IIGLNNLALL TVDKLKELKE SEQAPRQQAL APPLSSPPPL PLLSPHPPTG  180
VVELEEAALV RAETRDEYVM SSESSSIQQL MNDQWFMETT AFHQDFAGPS GVSEMGSAFE  240
YVASTSTEEN EELQKDLDIL FPRIYSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028119488.12e-79agamous-like MADS-box protein AGL80
TrEMBLA0A2R6QVS52e-79A0A2R6QVS5_ACTCH; MADS-box transcription factor PHERES like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-20AGAMOUS-like 80