PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn257961

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 202aa MW: 22220.9 Da PI: 4.6895

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn257961	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.5	4.6e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrr+C++dCv+apyf+ ++ +++fa+vhk+FGasnv+kll+ lp + r++a+ s+ yeA ar++dPvyG+v++il+lqq+++ l++e+++++ Achn257961 7 SCGACKFLRRRCTSDCVFAPYFCYDEaAAHFAAVHKVFGASNVSKLLSYLPVHSRSEAAISMSYEALARMQDPVYGCVAHILALQQEVAYLQEEIETIE 105 6*********************9868*****************************************************************9998 PP DUF260 99 ee 100 ++ Achn257961 106 NQ 107 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.659	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-37	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MIGIGSSCGA CKFLRRRCTS DCVFAPYFCY DEAAAHFAAV HKVFGASNVS KLLSYLPVHS 60 RSEAAISMSY EALARMQDPV YGCVAHILAL QQEVAYLQEE IETIENQMAN LAADASSFGS 120 SQSTSQHDEM NVQAYRSAET LLFPHEVNAS ANHAVYTQMN TQLPTVFELE DQTSVVSSNS 180 IPLERLFEGI DHQIFASYPW M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-36	3	112	7	115	LOB family transfactor Ramosa2.1
5ly0_B	5e-36	3	112	7	115	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277994.1	2e-87	PREDICTED: LOB domain-containing protein 33
Swissprot	Q9LHS8	3e-52	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	D7TLQ3	4e-86	D7TLQ3_VITVI; Uncharacterized protein
STRING	VIT_13s0019g02060.t01	7e-87	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12769	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	7e-43	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]