PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn258281

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 279aa MW: 30195.8 Da PI: 7.0708

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn258281	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00048	115	137	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Achn258281 115 YECKTCDRTFPSFQALGGHRASH 137 99**********99999998887 PP
2	zf-C2H2	12.8	0.00035	193	215	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cg Fs+ L H+r+H Achn258281 193 HDCSICGAQFSSGQALGGHMRRH 215 56********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.6E-8	114	137	No hit	No description
Pfam	PF13912	4.0E-13	114	139	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.056	115	137	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.533	115	142	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	117	137	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.6E-8	188	215	No hit	No description
SMART	SM00355	0.032	193	215	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.284	193	220	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.7E-11	193	216	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	195	215	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEIPEEFTGS SDHTLALKGK RAKRQRPFSS SIVAVTSSCS IFGGSGGGGD FYSPTSSPTS 60 SYENSTTTEE DEDMANCLIL LAQGGGSKQV DEEDEGKIRK FMATTTTAKS GFYVYECKTC 120 DRTFPSFQAL GGHRASHKKP KAVLEEGKRV VGLPQQSGEE EIEGQAKKII IPSFSFQVTA 180 KKSPHINNKC KLHDCSICGA QFSSGQALGG HMRRHRVVPP HAQASTSMAE SCEERESNKP 240 RTILSLDLNL PAPPEDFDYH TGKQHMVFAA PALVDCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274374.1	3e-79	PREDICTED: zinc finger protein ZAT5
Refseq	XP_028064146.1	4e-79	zinc finger protein ZAT5-like
TrEMBL	A0A2R6PQ91	0.0	A0A2R6PQ91_ACTCH; Zinc finger protein
STRING	VIT_06s0061g00760.t01	9e-74	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-52	C2H2 family protein