PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn258601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 316aa    MW: 35410.4 Da    PI: 6.046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn258601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.5e-26127187259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgy+WrKYGqK++ ++++pr+YYrCt++   +C+++k+v+r+++dp +  +tY+g+H+++
  Achn258601 127 DDGYAWRKYGQKVILNAKYPRNYYRCTHKfdqSCQATKQVQRTEDDPAMYRTTYHGHHTCK 187
                 8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-28112187IPR003657WRKY domain
SuperFamilySSF1182908.63E-26118187IPR003657WRKY domain
PROSITE profilePS5081122.274121184IPR003657WRKY domain
SMARTSM007743.8E-38126188IPR003657WRKY domain
PfamPF031064.8E-25127187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGSSSPEKIS SDREKAVQEL IQGRKLANQL RLLLGKPFGG DDKSAAAKDL VMKILGSFTE  60
TISILNRHAT DEVPDQVPAN SPCWDGRKSE DSDEITSKTS ALKDRRGCYK RRKTSQTWTR  120
ITPSLIDDGY AWRKYGQKVI LNAKYPRNYY RCTHKFDQSC QATKQVQRTE DDPAMYRTTY  180
HGHHTCKNLL QAPQIILDAN PKDSSFLLSF GTTNTSTKSH DPYFATFPCI KQEYRDEKPC  240
LNHIQSSSTD FFTLPDLSAF ESCEPVTGSD HDPDHGDVIS SGVYSCTTST TSLDMDMDLV  300
VGSVDFDDAF EFEFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-24126187869OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028055071.11e-126probable WRKY transcription factor 70
TrEMBLA0A2R6RXR50.0A0A2R6RXR5_ACTCH; WRKY transcription factor 70
STRINGEOY044382e-98(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-46WRKY DNA-binding protein 70