PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn259871
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 315aa    MW: 34778.4 Da    PI: 7.9074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn259871genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.5e-086792127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ykt+ C  f + G C+ G+ C+FaHgp
  Achn259871 67 YKTRMCLKFVE-GNCRNGEYCTFAHGP 92
                9**********.*************96 PP
2zf-CCCH28.82.1e-09126151126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +k+++C+ f+ + +C+yG++C+F H+
  Achn259871 126 QKMKICKKFFNGEECPYGEKCNFLHV 151
                 5899*******66************7 PP
3zf-CCCH44.33e-14203228126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC+ +  tG+C++G+rC+FaHg
  Achn259871 203 WKTKLCSKWETTGQCPFGERCHFAHG 228
                 8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-146499IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-86497IPR000571Zinc finger, CCCH-type
SMARTSM003560.00336692IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5776693IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-56792IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-7124152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122125153IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4125152IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-7126151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8127150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-17198233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-10201233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601202230IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7202229IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-11203228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNFSDHLPPP FPGGDGFWPS DEDPENPNFD LAPPLKRPRN FGINQPNSGI NNIPNPPMNR  60
GTGHIFYKTR MCLKFVEGNC RNGEYCTFAH GPEELRKPPP NWQEIVAAKE KVIGIGNWSD  120
DQRMIQKMKI CKKFFNGEEC PYGEKCNFLH VDPRESSAIS IGTMGQTMGQ KTGSGPDQCD  180
GNRSGSVGSD LDRFRGNPKG TYWKTKLCSK WETTGQCPFG ERCHFAHGLS ELQLPGGRIE  240
AEVVNALTIP TKPVLVPVND VAQSKAVVAA PAKEDGDGKK GFSKWKGPKK INRIYADWID  300
DLTPPHNLPN IVES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096225.11e-141zinc finger CCCH domain-containing protein 39-like
RefseqXP_028096228.11e-141zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT812e-75C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A2R6P2H00.0A0A2R6P2H0_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_008242734.11e-104(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.15e-65C3H family protein