PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn260421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 160aa    MW: 17781.7 Da    PI: 10.4875
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn260421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-193467134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                C+ C+ttkTplWR gp g+k+LCnaCG++yrk++
  Achn260421 34 CADCKTTKTPLWRVGPAGPKSLCNACGIRYRKRR 67
                ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-142884IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-133067No hitNo description
Gene3DG3DSA:3.30.50.102.9E-153267IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.6E-173467IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.3343464IPR000679Zinc finger, GATA-type
CDDcd002024.63E-143491No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MLKVTQFSIE GFIGHFDHLW ESVCEEMNEV KKCCADCKTT KTPLWRVGPA GPKSLCNACG  60
IRYRKRRNAM LGLNRGSEKR KEKPATTTPT QKISTGGSGK GGNLSEDLRV KLMDLGKEMV  120
RLQRQRSPMK RRKTNSRNLG EEEQAAFLLM ALSCGSVFA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028086304.14e-60GATA transcription factor 16-like
TrEMBLA0A2R6Q7515e-91A0A2R6Q751_ACTCH; GATA transcription factor
STRINGVIT_14s0060g01520.t011e-46(Vitis vinifera)
STRINGPGSC0003DMT4000637712e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-23GATA transcription factor 15