PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn260831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 262aa    MW: 29034 Da    PI: 8.2321
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn260831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.43e-3264121260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++v Y+eClkNhAas+Gg+a+DGCgEfmps geegt +al C+AC+CHRnFHR+e e e
   Achn260831  64 KRVFYRECLKNHAASMGGNALDGCGEFMPS-GEEGTLEALLCSACNCHRNFHRKELEGE 121
                  6899*************************9.999********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-2966118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-3168117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.13968117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2368121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.33E-21176250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-33177251IPR009057Homeodomain-like
PROSITE profilePS500718.503187251IPR001356Homeobox domain
TIGRFAMsTIGR015659.4E-27189245IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MELSSQEVGE IPIPINASYG HPMIHHHHII PTTTAQPCSN GPTSLPTTTT AAQEAQAQIM  60
PYKKRVFYRE CLKNHAASMG GNALDGCGEF MPSGEEGTLE ALLCSACNCH RNFHRKELEG  120
EQNYNCDQFF HRVGRKVILG HASNILGPKA FQTQQMVLPY SVGPIGSESD ELEEGGGGGD  180
GGGPPPQMKK RFRTKFTQEQ KEKMLGFAER VGWKMQKQEE NVVQQLCQEI GIKRRVLKVW  240
MHNNKHNLAK KNISNISQNP I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A7e-231882471675ZF-HD homeobox family protein
1wh7_A7e-231902471875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617744.11e-105zinc-finger homeodomain protein 4-like
SwissprotO647223e-75ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2R6R1730.0A0A2R6R173_ACTCH; Zinc-finger homeodomain protein
STRINGcassava4.1_013112m1e-104(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-69homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]