PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn261611

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

M-type_MADS

Protein Properties

Length: 105aa MW: 12094.4 Da PI: 10.3449

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn261611	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	101.2	3.8e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s Achn261611 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.2E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.347	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.55E-38	2	61	No hit	No description
SuperFamily	SSF55455	3.79E-31	2	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCST 60 SRYIYIYICI NLTFISSFNH MPSLPLLFSL SLSRIPVCRS KLLE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	9e-20	1	61	1	61	MEF2C
5f28_B	9e-20	1	61	1	61	MEF2C
5f28_C	9e-20	1	61	1	61	MEF2C
5f28_D	9e-20	1	61	1	61	MEF2C
6byy_A	8e-20	1	61	1	61	MEF2 CHIMERA
6byy_B	8e-20	1	61	1	61	MEF2 CHIMERA
6byy_C	8e-20	1	61	1	61	MEF2 CHIMERA
6byy_D	8e-20	1	61	1	61	MEF2 CHIMERA
6bz1_A	7e-20	1	61	1	61	MEF2 CHIMERA
6bz1_B	7e-20	1	61	1	61	MEF2 CHIMERA
6bz1_C	7e-20	1	61	1	61	MEF2 CHIMERA
6bz1_D	7e-20	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU357458	5e-76	GU357458.1 Pachysandra terminalis SEPALLATA3-like protein (SEP3_2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016546327.1	3e-37	PREDICTED: agamous-like MADS-box protein AGL9 homolog
Refseq	XP_022850778.1	1e-37	MADS-box protein EJ2-like
Swissprot	Q7Y040	2e-36	EJ2_SOLLC; MADS-box protein EJ2
TrEMBL	A0A444DFZ5	5e-37	A0A444DFZ5_ENSVE; Uncharacterized protein
STRING	cassava4.1_030388m	3e-37	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	5e-38	MIKC_MADS family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]