PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn262391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 1421aa    MW: 158921 Da    PI: 6.4608
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn262391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-06142161525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +Cr+f + G C +G++C+F H
  Achn262391 142 PCRDFTA-GKCTRGSQCRFLH 161
                 7******.************* PP
2zf-CCCH18.43.9e-06257276425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 ++C++f+  G C++ d+C+F+H
  Achn262391 257 PPCKYFMM-GKCSR-DNCRFSH 276
                 89******.*****.******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0024139163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483142164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313204231IPR000571Zinc finger, CCCH-type
SMARTSM003560.0096205230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4206230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375253279IPR000571Zinc finger, CCCH-type
SMARTSM003560.038253278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5172739.6397251240IPR031162CBP/p300-type histone acetyltransferase domain
SuperFamilySSF578503.41E-1311061180No hitNo description
PROSITE profilePS5013510.01411211168IPR000433Zinc finger, ZZ-type
SuperFamilySSF578507.53E-912231291No hitNo description
PROSITE profilePS5013411.01313021385IPR000197Zinc finger, TAZ-type
SuperFamilySSF579338.89E-1813041386IPR000197Zinc finger, TAZ-type
SMARTSM005511.4E-2613051383IPR000197Zinc finger, TAZ-type
Gene3DG3DSA:1.20.1020.104.8E-2013071389IPR000197Zinc finger, TAZ-type
PfamPF021353.7E-913121382IPR000197Zinc finger, TAZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0004402Molecular Functionhistone acetyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1421 aa     Download sequence    Send to blast
MMSGSARKRK SMWDSKEESQ LPVQISEKDA WHEKESYSNR HVSHDSRLSD EEDFNALKSK  60
DFSGRSSWEP SQGNSIQKDN RRDLNDIHET RKAWDGDKSY HASSDFDGWG QQNKSRSPEN  120
SRSQSYRWND RRRSGSGVPS HPCRDFTAGK CTRGSQCRFL HEDNINPRDG ERLEKERAVR  180
WRSTHEHGGN YYGGEKDEPQ RNSGKYTVLC NNFLKGRCLG GSSCRYSHHD DSGDNCERSN  240
RNSSDRDYQQ PPRNGNPPCK YFMMGKCSRD NCRFSHNGPA RGHPEGKSQG DNWGNDSGDM  300
NNSWNGPKWD EITAVSIVEQ STDWGNIEKG TSIDPTISEK QIDYGWGHSL EDNTKEWNGS  360
TWADATGFSE SGNSTGWGSN KVENVNLSHA ERRTDGGCDH SLDNESRMWG GPVGKAKAVE  420
RDENASPHLG SGGDVVDMCI TESEDVARSF GREPLLTPLG LQSQTPYGIS KNVHEQNIMQ  480
EAFPEKSLIQ QHHNKMGGDN AITNDLNSVC EVDVYGNTGH PSLVRGHMFN QNADSFGSRT  540
QSAGGINQSQ HMISVNHSNG HDIDLNGPAQ QNNSSSNLQN QMQNQHGESV KTMVNCAIPQ  600
DVANSEQAAQ LTNFPASLMQ IFGNGQLPQL YAALNPQTSV DSVLSLPHSA SLPPPITSMD  660
AQLDPAAMSQ KQYDPIADSV DINKPGDGTQ PPECLPDSVE QKNQMLLAQS SPPSAVGFDS  720
GEHPENGGTE NNNRRSPDLK QQKAVANLVL EENSKSIPEK WKQEQESICA RIVDANTKIV  780
DGTIGKDEKA MRLFKNALVD FVKELLKPKW KEGQMSREVH KAIVKKVVDK VTSTVQGANI  840
PKTQERIDQY LAYSKPKLNK LVEQHIGGQN TRTLRNLDSH IGGGGKRKSC GFSNGALNGG  900
LGIPQNNVQV INDPDSSAQP QPQVDGRSSF NKVEHYIQRQ LKAAHACVRS DCSLDLPCSI  960
NGSCEVIDTG VIAVRLVSET SPAVVETSED LDPLLKRRKA ERPDISDMEK GNLDDNYREK  1020
TAMKTVISDD PDQQECIQSE NDTDRAKQED MTLPAESVPG TNSGKPKIRG VSMTELFTPE  1080
QVREHIMGLR KSVGQSKSKD LLLMLKIGET ICPMKEDFIM VHLQHACTHC CILIVSGNHW  1140
VCNECEKFQL CDKCYETEQK LEERDQHPIN QMDKHLLYLV EINDVPEDTE DKNEILESQL  1200
FDTRQAFLSL CQANHYQYDT IRRAKHSSMM VLYHLHNPAA PAFVTTCKMC HLDVEAGQGW  1260
RCEIYPDYDV CNAFYQKDGG IDHPHQLTNH PSMVDCHAQN QETRELRVLQ LKKMLDPMVH  1320
ASQCYSPHCE YPKCRKLKSL FCHGIQCKTR AAGGCALFKQ MWYLLQFHAR ACKESQCHVP  1380
HCRDLKEYLG RLQQQSDSWR RAAVKDMMRQ RAAEVAGNAE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3t92_A2e-1313071389991HISTONE ACETYLTRANSFERASE P300 TAZ2-CCAAT/ENHANCER-BINDING PROTEIN EPSILON
5hpd_A3e-1313041398396CREB-binding protein,Cellular tumor antigen p53 fusion protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062079.10.0zinc finger CCCH domain-containing protein 55-like isoform X1
RefseqXP_028062080.10.0zinc finger CCCH domain-containing protein 55-like isoform X1
TrEMBLA0A2R6QYN00.0A0A2R6QYN0_ACTCH; Zinc finger CCCH domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-14C3H family protein