PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn263141
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 121aa    MW: 13759.4 Da    PI: 10.5135
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn263141genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-2675120146
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 
                 krien++ rqvtf+kRr+g+lKKA+ELSvLCda++ +i+fss+gkl
  Achn263141  75 KRIENNTSRQVTFCKRRAGLLKKAHELSVLCDAQIGLIVFSSQGKL 120
                 79******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.3301.1E-4137IPR027443Isopenicillin N synthase-like
SuperFamilySSF554551.44E-2467120IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.28267120IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-3067120IPR002100Transcription factor, MADS-box
CDDcd002653.84E-3268120No hitNo description
PRINTSPR004048.5E-276989IPR002100Transcription factor, MADS-box
PfamPF003198.9E-2476120IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-2789104IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-27104120IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MAEYRSELKK LTEKVMEVMD ENLGLPKGYI QKGAKMEKKM PSLAPRICFT KFKNTRKKEV  60
YFTLIDMGRG TIEVKRIENN TSRQVTFCKR RAGLLKKAHE LSVLCDAQIG LIVFSSQGKL  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A7e-1667120154MEF2 CHIMERA
6bz1_B7e-1667120154MEF2 CHIMERA
6bz1_C7e-1667120154MEF2 CHIMERA
6bz1_D7e-1667120154MEF2 CHIMERA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.28e-27MIKC_MADS family protein