PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn263441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 162aa    MW: 18633.5 Da    PI: 4.8201
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn263441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.58.7e-1192113223
                 --SS-EEEEEEE--TT-SS-EE CS
        WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                 +Dg++WrKYG+K+vk+s++pr 
  Achn263441  92 EDGFKWRKYGKKMVKNSPNPRY 113
                 8*******************95 PP
2WRKY37.35.6e-121231541748
                 T-SS-EEEEEE-STT---EEEEEE-SSSTTEE CS
        WRKY  17 gsefprsYYrCtsagCpvkkkversaedpkvv 48 
                  ++f r+YYrC+ +gCpvkk+ver++edp+++
  Achn263441 123 PNHFIRNYYRCSVEGCPVKKRVERDREDPSTF 154
                 68899************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-2477154IPR003657WRKY domain
SuperFamilySSF1182906.8E-1784155IPR003657WRKY domain
PROSITE profilePS5081118.56786154IPR003657WRKY domain
SMARTSM007742.9E-2191158IPR003657WRKY domain
PfamPF031066.6E-1392154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDSQENSYAN QSNFELSEFF EFDEWEEEDP GMVVSDYPQN PVYAANDQVS YAGGSSSHHE  60
RPSTKDPPSG QEEKEIKEKV AFKTKSEVEI LEDGFKWRKY GKKMVKNSPN PRYNFNNLTS  120
VVPNHFIRNY YRCSVEGCPV KKRVERDRED PSTFPCVIAI T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-1481151761Probable WRKY transcription factor 4
2lex_A7e-1481151761Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022882272.12e-53probable WRKY transcription factor 50 isoform X1
SwissprotQ8VWQ52e-34WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A2R6QYV71e-78A0A2R6QYV7_ACTCH; WRKY transcription factor
STRINGXP_006453040.13e-53(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-32WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]