PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn264251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 770aa    MW: 87759.9 Da    PI: 8.0647
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn264251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.19.1e-1153947661373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+ v +gd + a++ L+++++++sp+gd  qRla +f++ L+arla+++s++y+al++++ s    +++l+a++l+  ++P++kfs + aN
  Achn264251 394 LRTLLINCAQSVIAGDSRTANEQLKQIRQHSSPSGDGSQRLADVFANSLEARLAGTGSQIYAALASKRMS---AVDTLKAYQLYLSACPFMKFSIFFAN 489
                 6789************************************************************999998...9************************* PP

        GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 ++I + + ++  +++HiiDf+i +G+QWp L q L++ p+gpp+lRiTg++ p sg   +e +eetg+rLak++e+++v+f++++ +a+++e++++e+L
  Achn264251 490 RMIADLAMKSakKKLHIIDFGILHGFQWPILVQHLSCLPGGPPELRITGIEMPLSGfrPAELVEETGRRLAKYCERFKVQFQYHA-IARKWETIKIEDL 587
                 *****8887768999**************************************9999999*************************.7************ PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                 ++ ++E+laVn+ ++ ++lld++v+ +s+rd+vLkl+++++P+++v++  + ++n + F++rf eal +ys+lfd++++++pre+++r+  E+e+ gre
  Achn264251 588 NIFNDEVLAVNCLFRFKNLLDDTVAENSPRDAVLKLIRKMNPEIFVHTVVNGSYNIPFFVTRFREALFHYSSLFDMIDNNMPREDQQRTIFEQEFYGRE 686
                 *************************************************************************************************** PP

        GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 i+nv+aceg+er+er et+++W++r ++aGF+ ++l+++ +k+a+  +++ + + ++++e+ ++l++gWk+r   + S+W
  Achn264251 687 IMNVIACEGSERVERPETYKQWQDRNMRAGFRILTLKQELVKKARGKVKRDHHKDFMIDEDGQWLLQGWKGRIFCASSCW 766
                 ***************************************************9888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-6190239IPR009057Homeodomain-like
SuperFamilySSF466895.93E-9192243IPR009057Homeodomain-like
CDDcd116602.82E-11197241No hitNo description
PROSITE profilePS5098567.08368747IPR005202Transcription factor GRAS
PfamPF035143.2E-112394766IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MRPHVFVIRP RGNRQHSEPN SLDLELPLLQ GDCDDLSPSR SVRTRNVGFG ELDHYPKPEG  60
ILLAMTIAHR QYLYGKVTGN KKTIMEKATA IVGGGEHVDL LVRGKKIIDE IKILSETGIS  120
HESRLDVMLE PKPLTRYSPV AAVVHQGTFD ASTGPLFCNL DDEIWEDHEV AVSQTDILVG  180
KNATSRETAQ QRKSESFSVP EVETLVRWVE KLGTGRWKKI KEENFRNTRN RTHKDLKDKC  240
REDSSACSQP KTDIVQQRAP FLGKKVLYVE SYTFRPELKE GSPEVLVKVE KDDVENSPNG  300
PRGRKNHQRE DSNFEEERSS KQSAAYVEED ELCEMFDRYL LCTDETGQPG FCDIDEEEQI  360
EVTKASQRNG QPNGSSGGKT RAKKQSNKKK VVDLRTLLIN CAQSVIAGDS RTANEQLKQI  420
RQHSSPSGDG SQRLADVFAN SLEARLAGTG SQIYAALASK RMSAVDTLKA YQLYLSACPF  480
MKFSIFFANR MIADLAMKSA KKKLHIIDFG ILHGFQWPIL VQHLSCLPGG PPELRITGIE  540
MPLSGFRPAE LVEETGRRLA KYCERFKVQF QYHAIARKWE TIKIEDLNIF NDEVLAVNCL  600
FRFKNLLDDT VAENSPRDAV LKLIRKMNPE IFVHTVVNGS YNIPFFVTRF REALFHYSSL  660
FDMIDNNMPR EDQQRTIFEQ EFYGREIMNV IACEGSERVE RPETYKQWQD RNMRAGFRIL  720
TLKQELVKKA RGKVKRDHHK DFMIDEDGQW LLQGWKGRIF CASSCWVNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-503777671378Protein SCARECROW
5b3h_D6e-503777671378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109475.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2R6P7Z20.0A0A2R6P7Z2_ACTCH; Scarecrow-like protein
STRINGXP_009606498.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]