PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn264271
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 806aa    MW: 90749.2 Da    PI: 5.9946
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn264271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.44.1e-1764137289
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                  Y+eYA++vGFs+r+s+ ++sk +g +t r+f C + g +++  ++              C+a+l+v+ + ++kw+vtk+++eH+H+ 
  Achn264271  64 LYDEYARRVGFSTRVSQYNRSKSDGLVTAREFLCARDGLKRRAGDS--------------CDAMLRVEFKGQDKWVVTKFVKEHSHST 137
                 7**************************************9998877..............**************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1364137IPR004330FAR1 DNA binding domain
PfamPF105513.0E-27275366IPR018289MULE transposase domain
PROSITE profilePS5096610.967553589IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-10554587IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MDVEVIDMEE GNMVHCNIAD DEDTEPNDSG EANTAGNSTA QDEDGDVEPH VGMEFDSVDA  60
GKSLYDEYAR RVGFSTRVSQ YNRSKSDGLV TAREFLCARD GLKRRAGDSC DAMLRVEFKG  120
QDKWVVTKFV KEHSHSTVSP SKVHYLRPRR HFAGAANNTA ETYQGVGIVP SGIMYVSMDG  180
NRVPVETSRG ARNTPVESNH PVKNSGSANN AARPVVQKRT LGKDAQNLLD YFKKMQAENP  240
GFYYAIQLDE DNRMANVFWA DAKSRSAYSN FGDAVTLDTM YRVNQYRVPF APFTGVNHHG  300
QTVLFGCALL LDESEATFVW LFRTFLAAMN DQAPVSIITD QEKAIQAAVL QVFPESRHCI  360
NKWDVLREGQ ERLAHVCYVH RNFQVELYNC INLTETIEEF ESAWDSVLDK YELRTNDWLQ  420
SLYSARAQWV PAYVRDSFFA AISPNQGFQR SFFDGYVNQQ TTLPMFFRQY ERALENSCEK  480
EIEADFDTIC TTPVLRTPSP MEKQAANLYT RKIFAKFQDE LVETFVYTAN RIEGNGDIST  540
FRVAKFEDDR KAYIVTFNGT EMRASCSCQM FEYSGILCRH ILTVFTVTNV LTLPSHYILK  600
RWTRNAKNGI GSDESFELHV PESLTLRYNN LCREAIKYAE EGAIAPETFN VAMIALREGA  660
KKVATAKKNV AKVAPPSSKV SGIGYGDKRA APDMAPLLWP RQDEITRRFN LNDASVPAQA  720
VTDLNLPRMA PVSLHRDDGH PDNMVVLPCL KAMTWVMENK NSTPANRVAV INLKLQDYSK  780
PTSGESEVKF QLSRVTLEPM LRSMA*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102379.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_028102380.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2R6P7X50.0A0A2R6P7X5_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGEOY342830.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]