PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn264411

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 1363aa MW: 153706 Da PI: 6.4927

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn264411	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96.3	3.6e-30	663	754	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r e++k + + +r+raetr+gC+a+++vk +++g+w+v+ ++ eHnHel+p Achn264411 663 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVEKEKLghNARVKRPRAETRVGCRAMVVVKIQDSGRWVVSGFVREHNHELVP 754 9*************************************99998877888899**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd07418	0	93	469	No hit	No description
SuperFamily	SSF56300	2.15E-69	121	283	IPR029052	Metallo-dependent phosphatase-like
Gene3D	G3DSA:3.60.21.10	8.7E-79	125	463	IPR029052	Metallo-dependent phosphatase-like
SMART	SM00156	1.0E-59	125	462	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTS	PR00114	3.1E-36	159	186	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
Pfam	PF00149	3.6E-40	159	387	IPR004843	Calcineurin-like phosphoesterase domain, apaH type
PRINTS	PR00114	3.1E-36	189	216	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTS	PR00114	3.1E-36	222	246	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PROSITE pattern	PS00125	0	223	228	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTS	PR00114	3.1E-36	259	285	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
SuperFamily	SSF56300	2.15E-69	329	458	IPR029052	Metallo-dependent phosphatase-like
PRINTS	PR00114	3.1E-36	413	429	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
Pfam	PF03101	4.9E-28	663	754	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-30	875	967	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.165	1155	1191	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.5E-11	1155	1189	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.8E-9	1166	1193	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding
GO:0016787	Molecular Function	hydrolase activity

Sequence ? help Back to Top
Protein Sequence Length: 1363 aa Download sequence Send to blast
MNFKIFRFKK NGFRDSECTI LEQDPERIMS GNDSGSPTTD STTTTAVTAD DNRKPPPSSS 60 DEDFFSSASV ASSSSSDENP PPPPPKIPIS WPSDGILSRD WVMDLMTAFD WGSRNLPPSE 120 FPSILPVQVF DSLILSASKI LHKDPNCVRI DSGSGADSRV VVVGDVHGQL HDVIFLLRDA 180 GFPADDRVFV FNGDYVDRGA WGLETFLLLL AWKVSMPNRV YLLRGNHESK YCTSVYGFEK 240 EVLTKYGDKG KHAYRKCLGC FEGLPLASII GEHVYTAHGG LFRSVATTPS KRSKGKKTRK 300 IIVNPEASSL SLGSLDELSN ARRSVLDPPW EGLNLIPGDV LWSDPSMSPG LSPNKERGIG 360 LLWGPDCTEE FLKKFNLKLI IRSHEGPDAR EKRSGLGGMD EGYTIDHVVE SGKLITLFSA 420 PDYPQFQATE ERYKNKGSYI VLQPPHFDSP VFHSFEAITP RPKDSAGKDQ LEDDVCTVHN 480 CIGMKLKELK HDSGVNVVRY IALPLSGIIV VKTAHYFGFV GSDSLYQFVL LLQHALPSAM 540 TIGTITQLFE VDIVFFFTIL LLVCRIVWFL NKIKEAIIFE MEFEPLGMGN EVIEFDMMGL 600 GDDAIDIEHT IDDDEDRLVE NSYGSIGGSI GGGTGELYIP DGDTNLEPCE GMEFESEEAA 660 KAFYNSYARR VGFSTRVSMS RRSRRDGAII QRSFVCAKEG FRVEKEKLGH NARVKRPRAE 720 TRVGCRAMVV VKIQDSGRWV VSGFVREHNH ELVPPDKVHC LRSHRHVSGS AKSLIDTLQG 780 AGIGPSGIMS ALIKEYGGIS NIGFTERDCR NYMRSSRQRT LGGDTQILLD YLRQKQLENP 840 AFFYAVQGDE DQCMSNIFWA DPKARTNYAY FGDTVTFDTT YRSNRYRLPF APFTGVNHHG 900 QPVLFGCALL INESEASFVW LFRTWIEAMS GQPPVSITTD HDRVIRLAVT EILPETRHRF 960 CKWHIFKESQ EKLSPVLSEH LNFEAELHKC VNVSESTEEF ESCWLSLIDR CGLRENEWLQ 1020 TIYADRRQWV PVYLRDTFFA EMSITQQSDS MNSYFDGYIN ASTTLQLFVK QYEKALESRY 1080 EKEVKADYDT LNAAPVLKTP SPMEKQAAAA YTKKLFMKFQ EELVETLTFL ATKVEDEEAF 1140 TTYQVAKFEE NHKVYFVKLN AREVKATCSC QMFEFSGLLC RHILTVFRVT NVLTLPSLYI 1200 LKRWTRNAKS GVMLEERAND LLNNSRESLT VRYNNLRHEA LKYVDEGVKT VEIYNVAMDA 1260 LREAASKVAV ANNKGGRITD RDHLSRRSHP NDTGMLHQSG SEGPLSQDEQ DRKIQKLTRQ 1320 LERAQRKCEV YRANLLSVLK DIEQQKLQLT VKVQSIKLGM KD*

Sequence ? help Back to Top

Protein Sequence Length: 1363 aa Download sequence Send to blast

MNFKIFRFKK NGFRDSECTI LEQDPERIMS GNDSGSPTTD STTTTAVTAD DNRKPPPSSS  60
DEDFFSSASV ASSSSSDENP PPPPPKIPIS WPSDGILSRD WVMDLMTAFD WGSRNLPPSE  120
FPSILPVQVF DSLILSASKI LHKDPNCVRI DSGSGADSRV VVVGDVHGQL HDVIFLLRDA  180
GFPADDRVFV FNGDYVDRGA WGLETFLLLL AWKVSMPNRV YLLRGNHESK YCTSVYGFEK  240
EVLTKYGDKG KHAYRKCLGC FEGLPLASII GEHVYTAHGG LFRSVATTPS KRSKGKKTRK  300
IIVNPEASSL SLGSLDELSN ARRSVLDPPW EGLNLIPGDV LWSDPSMSPG LSPNKERGIG  360
LLWGPDCTEE FLKKFNLKLI IRSHEGPDAR EKRSGLGGMD EGYTIDHVVE SGKLITLFSA  420
PDYPQFQATE ERYKNKGSYI VLQPPHFDSP VFHSFEAITP RPKDSAGKDQ LEDDVCTVHN  480
CIGMKLKELK HDSGVNVVRY IALPLSGIIV VKTAHYFGFV GSDSLYQFVL LLQHALPSAM  540
TIGTITQLFE VDIVFFFTIL LLVCRIVWFL NKIKEAIIFE MEFEPLGMGN EVIEFDMMGL  600
GDDAIDIEHT IDDDEDRLVE NSYGSIGGSI GGGTGELYIP DGDTNLEPCE GMEFESEEAA  660
KAFYNSYARR VGFSTRVSMS RRSRRDGAII QRSFVCAKEG FRVEKEKLGH NARVKRPRAE  720
TRVGCRAMVV VKIQDSGRWV VSGFVREHNH ELVPPDKVHC LRSHRHVSGS AKSLIDTLQG  780
AGIGPSGIMS ALIKEYGGIS NIGFTERDCR NYMRSSRQRT LGGDTQILLD YLRQKQLENP  840
AFFYAVQGDE DQCMSNIFWA DPKARTNYAY FGDTVTFDTT YRSNRYRLPF APFTGVNHHG  900
QPVLFGCALL INESEASFVW LFRTWIEAMS GQPPVSITTD HDRVIRLAVT EILPETRHRF  960
CKWHIFKESQ EKLSPVLSEH LNFEAELHKC VNVSESTEEF ESCWLSLIDR CGLRENEWLQ  1020
TIYADRRQWV PVYLRDTFFA EMSITQQSDS MNSYFDGYIN ASTTLQLFVK QYEKALESRY  1080
EKEVKADYDT LNAAPVLKTP SPMEKQAAAA YTKKLFMKFQ EELVETLTFL ATKVEDEEAF  1140
TTYQVAKFEE NHKVYFVKLN AREVKATCSC QMFEFSGLLC RHILTVFRVT NVLTLPSLYI  1200
LKRWTRNAKS GVMLEERAND LLNNSRESLT VRYNNLRHEA LKYVDEGVKT VEIYNVAMDA  1260
LREAASKVAV ANNKGGRITD RDHLSRRSHP NDTGMLHQSG SEGPLSQDEQ DRKIQKLTRQ  1320
LERAQRKCEV YRANLLSVLK DIEQQKLQLT VKVQSIKLGM KD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5jjt_A	2e-47	133	462	194	464	Serine/threonine-protein phosphatase 5
5jjt_B	2e-47	133	462	194	464	Serine/threonine-protein phosphatase 5
5obl_A	2e-47	133	462	219	489	Serine/threonine-protein phosphatase 5
5obl_B	2e-47	133	462	219	489	Serine/threonine-protein phosphatase 5
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	296	KRSKGKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028062723.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2R6RJB1	0.0	A0A2R6RJB1_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_010266300.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]