PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn264991
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 123aa    MW: 13214.5 Da    PI: 7.5739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn264991genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05729123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC+ C+++F++   L  H++ H
  Achn264991  7 YKCTLCPRTFTSGQGLAGHMNAH 29
                9*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.93E-7436No hitNo description
Gene3DG3DSA:3.30.160.608.7E-4530IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.9E-6629IPR007087Zinc finger, C2H2
SMARTSM003550.01729IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18734IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MERNKVYKCT LCPRTFTSGQ GLAGHMNAHQ YDHVYQSERS PNLRLPSNPA PELARPKGTT  60
GVTYYQAPVV QAGLGGGGSQ SSSERTVTNP NHRVAAKGGE DEEDVTSETR VEVDTELRLG  120
RG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.17e-07C2H2 family protein