PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn265441

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HD-ZIP

Protein Properties

Length: 250aa MW: 28599.8 Da PI: 4.7667

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn265441	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.8e-19	21	73	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q+++Le++Fe ++++ ae++ ++Ak+lgL+ rqV +WFqNrRa++k Achn265441 21 KRRLSFDQVKALEKVFEVDNKLEAEQKVKIAKELGLQPRQVAIWFQNRRARWK 73 4578889*********************************************9 PP
2	HD-ZIP_I/II	119.7	1.5e-38	19	111	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE+ Fe ++kLe e+Kv++a+eLglqprqva+WFqnrRAR+ktkqlE++y Lk++y+ lk + e+Leke+e L +elk+ Achn265441 19 EKKRRLSFDQVKALEKVFEVDNKLEAEQKVKIAKELGLQPRQVAIWFQNRRARWKTKQLEREYGDLKANYEDLKLNFEKLEKEKEVLMAELKQ 111 69***************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.88E-19	14	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	15	75	IPR001356	Homeobox domain
SMART	SM00389	8.4E-18	18	79	IPR001356	Homeobox domain
CDD	cd00086	1.83E-16	20	76	No hit	No description
Pfam	PF00046	1.2E-16	21	73	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-18	27	74	IPR009057	Homeodomain-like
PRINTS	PR00031	1.4E-5	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	55	71	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.7E-13	75	116	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MLDGLDDGDG TEEIGQSGEK KRRLSFDQVK ALEKVFEVDN KLEAEQKVKI AKELGLQPRQ 60 VAIWFQNRRA RWKTKQLERE YGDLKANYED LKLNFEKLEK EKEVLMAELK QLRSKLGEEN 120 TETNHSAKEE FPKLEAKNNV SGQNEASLTA TNQDCEVQNN GRSSPEIKSN VGFRDGLEKS 180 NCSDVFLESD PSSCVYSTWM NSYFPYLGSR GVQGLPHQLV KMEEQNMFCA EDSFSTFSVD 240 QTFTFHWQN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	75	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.
UniProt	Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269\|PubMed:12678559}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.
UniProt	INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:12678559, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028074224.1	1e-87	homeobox-leucine zipper protein ATHB-6-like
Swissprot	P46667	1e-42	ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
Swissprot	Q6K498	8e-43	HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
Swissprot	Q9XH37	8e-43	HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBL	A0A3S8T8X2	0.0	A0A3S8T8X2_ACTDE; Homeobox-leucine zipper protein 1
STRING	cassava4.1_014014m	4e-66	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12939	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	4e-35	homeobox protein 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Stamm P, et al. The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination. Plant Physiol., 2017. 173(1): p. 907-917 [PMID:27872245]