PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn266441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 564aa    MW: 63347.3 Da    PI: 4.5438
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn266441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.3e-53421682128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 ppGfrFhPtdeelv +yLk+k+ +++l+l ++i e+d+yk++P++Lp  +k+k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+++++ +++
  Achn266441  42 PPGFRFHPTDEELVLYYLKRKICRRRLKL-DIIGETDVYKWDPEELPglSKLKTGDRQWFFFSPRDRKYPNGARSNRATRQGYWKATGKDRTITC-NSR 138
                 8****************************.99***************6559999*****************************************.999 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kktLvfykgrap ge+tdWvmhey+l
  Achn266441 139 AVGVKKTLVFYKGRAPVGERTDWVMHEYTL 168
                 ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-5940191IPR003441NAC domain
PROSITE profilePS5100555.9341191IPR003441NAC domain
PfamPF023655.0E-2842168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MERKLGVLFR VFSLFLPRTN NCLGSMTVPE DASCFGDGGC WPPGFRFHPT DEELVLYYLK  60
RKICRRRLKL DIIGETDVYK WDPEELPGLS KLKTGDRQWF FFSPRDRKYP NGARSNRATR  120
QGYWKATGKD RTITCNSRAV GVKKTLVFYK GRAPVGERTD WVMHEYTLDE EELKRCQTAQ  180
DYYALYKVYK KSGPGPKNGE QYGAPFREED WADDDTTIVN DRTKHETPVK QVNDIASVDN  240
TRTNCQVQSA FNDFDEFMNQ IANESLLVQP LGVDFGYALH EVVGEEENQS SLVDQSFREA  300
NLQERSMVLQ PSWQQNDVQP SFGLTQSATS QLKLCETSEV TSAPIISRQE SHDSELEDFI  360
EMDDLVGPGP TVQNMANDLI GPAPTVDMPV ENIQFDEFDG LSELDLYYNA AMFIRDMGLI  420
NPETLPHSYG NNLQNEMVSQ LDYQLQQHSN YSSEIDGVVC DGSSASLPTG VYENQNQNQN  480
QNQNQIGNAD SGGYSWFTSA LWSFVESVPT APASASEGAA LMNRAFERMS SFCRGARITA  540
GDTSVAAGNP AANLHRNICK RID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-484216816140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028089428.10.0NAC domain-containing protein 17-like isoform X1
TrEMBLA0A2R6RNS90.0A0A2R6RNS9_ACTCH; NAC domain-containing protein
STRINGXP_008237396.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-118NAC domain containing protein 17