PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn266541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 156aa    MW: 18083 Da    PI: 10.4746
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn266541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.51.3e-21958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien+++r+vtfsk rn ++ KA+ELS LCd++ a+i+fs++g+l  +s
  Achn266541  9 KRIENNTRREVTFSKLRNDLIEKAYELSMLCDIDLALIMFSPSGHLTQFS 58
                79*********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.567161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-21261IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-21323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGRMKLEIKR IENNTRREVT FSKLRNDLIE KAYELSMLCD IDLALIMFSP SGHLTQFSGK  60
RSVFQSDPPN MTSLEEFESC EKQLVDTLTT ITEREAHKSF TLIIRLALLL RGWNSQVWQP  120
QHHVTKQRLH HKAQLNNRTL KPLIMRVNLS PSRLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027150051.11e-32agamous-like MADS-box protein AGL104
TrEMBLA0A199VQ628e-37A0A199VQ62_ANACO; Agamous-like MADS-box protein AGL104
STRINGSi008439m7e-28(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-26AGAMOUS-like 104