PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn266751
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 260aa    MW: 29469.6 Da    PI: 8.8711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn266751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.6e-07102121120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C+ C+k+F+r  nL+ H+
  Achn266751 102 FSCHVCDKTFNRYNNLQMHM 121
                 89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.53E-697124No hitNo description
Gene3DG3DSA:3.30.160.607.5E-5100124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.616102129IPR007087Zinc finger, C2H2
SMARTSM003550.091102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM00355100149181IPR015880Zinc finger, C2H2-like
SMARTSM00355150186206IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEVSDISSGV HTDDSEKFHV LPNRAQNFLE PLPLLSCLQT PLEESPKPFD DERDDITVAL  60
HIGLPNCTDG FVNSSEKKEV KVEAAQYWIP TPAQILVGFT NFSCHVCDKT FNRYNNLQMH  120
MWGHGSQYRR GPDSLKGSQP RAMVGVPCYC CEEGCKNNIA HPRAKPLKDF RTLQTHYKRK  180
HGAKRFACRK CGKCLAVKGD WRTHEKNCGR RWLCLCGSDF KHKRSLKDHI RSFGSGHGPF  240
PPSYDGLEMR KNGVRSFFV*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028120523.11e-146protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-103TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A2R6Q0F50.0A0A2R6Q0F5_ACTCH; Protein TRANSPARENT TESTA like
STRINGEOY159711e-128(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132641517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]